PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022924155.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 385aa MW: 44015.7 Da PI: 8.4558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022924155.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022924155.1 57 YVCEICNQGFQRDQNLQMHRRRH 79 9*********************9 PP
2	zf-C2H2	16.3	2.8e-05	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_022924155.1 136 WVCEKCSKGYAVQSDYKAHLKTC 158 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MLADLSSPSL PCFEPLPNCF ESNGTNTKRK RRPAGTPDPD AEVVSLSPKT LLESDHYVCE 60 ICNQGFQRDQ NLQMHRRRHK VPWKLLKRTE PTTAVRKRVF VCPEPSCLHH NPTHALGDLV 120 GIKKHFRRKH SNHKQWVCEK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH 180 QDSCKLGHHH QQSEQKLPCL SRTASSPTPS PSSDTNFSFF NKNHTIIPQR IITHHPQNLE 240 LQLSNNSTSI HVSVSPKRHE NYSTHLQLSI GSCNYDEKND DGDDDHDEKT RNGLDFLKVK 300 EEAKEQMRVA MEEKAIAEEA RNEAKKQIEI AEKELANAKR MRQEAQGELQ RALALKEHAM 360 KQINSTILQI TCQVCRQHFE PFPTI

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MLADLSSPSL PCFEPLPNCF ESNGTNTKRK RRPAGTPDPD AEVVSLSPKT LLESDHYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRTE PTTAVRKRVF VCPEPSCLHH NPTHALGDLV  120
GIKKHFRRKH SNHKQWVCEK CSKGYAVQSD YKAHLKTCGT RGHSCDCGRV FSRVESFIEH  180
QDSCKLGHHH QQSEQKLPCL SRTASSPTPS PSSDTNFSFF NKNHTIIPQR IITHHPQNLE  240
LQLSNNSTSI HVSVSPKRHE NYSTHLQLSI GSCNYDEKND DGDDDHDEKT RNGLDFLKVK  300
EEAKEQMRVA MEEKAIAEEA RNEAKKQIEI AEKELANAKR MRQEAQGELQ RALALKEHAM  360
KQINSTILQI TCQVCRQHFE PFPTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-120	C2H2 family protein