PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022923872.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 564aa MW: 62455 Da PI: 8.6193

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022923872.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.6	4.6e-18	265	314	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++LrellP + ++K +Ka+ L +++eYI+ Lq XP_022923872.1 265 RSKHSATEQRRRSKINDRFQKLRELLPCS----DQKRDKASFLLEVIEYIQFLQ 314 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDPSQSFQ GGFRTTHDFL QPLERIEKTC 60 AKKEQTMNVS TVERAAPPLA TQARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVLP 120 VPQASNTDKS DDNSRCSSLS ASSFTLWEES AVKKGKTRKE NLSEKPGLRE PPAKMEQWAV 180 STERPIQSSC SSFSSLSSSQ PSGQQKRSFG EMLKSAANVS SKEEELDDGK EFVIKKESSP 240 STAYRGDLRI NVGGKCSGQK ANTPRSKHSA TEQRRRSKIN DRFQKLRELL PCSDQKRDKA 300 SFLLEVIEYI QFLQEKVRKY ESSPPQGWYD EPAKLLPCRN NCNPARCYID QSQVAKSGPV 360 FIFAGCDQKN MSHFPAFLPR CSHNPVESNT STTFGEADHH HLGSTNKATS YPMLGPRRFI 420 PVTSEGEKTK IYSQVAHNAD KKPYEMQQLL CETRACTTDI AAVDNKLKEP EQSIEGGRIS 480 ISSAYSQELL KILTQALQSS GVDMSQASIA VQIELGKRTN CRDTAANPAI VDDSARPSER 540 AVVGTRVAAA EEDMEQAFRK KQNT

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MELPQPSRPL GTEGRKPTHD FLSLYSHSTA DQQDPSQSFQ GGFRTTHDFL QPLERIEKTC  60
AKKEQTMNVS TVERAAPPLA TQARNSPVER LLPGGIGSCI IGHISYFNHR VPKTEGSVLP  120
VPQASNTDKS DDNSRCSSLS ASSFTLWEES AVKKGKTRKE NLSEKPGLRE PPAKMEQWAV  180
STERPIQSSC SSFSSLSSSQ PSGQQKRSFG EMLKSAANVS SKEEELDDGK EFVIKKESSP  240
STAYRGDLRI NVGGKCSGQK ANTPRSKHSA TEQRRRSKIN DRFQKLRELL PCSDQKRDKA  300
SFLLEVIEYI QFLQEKVRKY ESSPPQGWYD EPAKLLPCRN NCNPARCYID QSQVAKSGPV  360
FIFAGCDQKN MSHFPAFLPR CSHNPVESNT STTFGEADHH HLGSTNKATS YPMLGPRRFI  420
PVTSEGEKTK IYSQVAHNAD KKPYEMQQLL CETRACTTDI AAVDNKLKEP EQSIEGGRIS  480
ISSAYSQELL KILTQALQSS GVDMSQASIA VQIELGKRTN CRDTAANPAI VDDSARPSER  540
AVVGTRVAAA EEDMEQAFRK KQNT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	6e-85	bHLH family protein