PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022923397.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 729aa    MW: 79755.5 Da    PI: 5.7455
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022923397.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS323.25.1e-993687282374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++ ++  pp+  ++ +++ ++ a+k+f e+sP+++f ++
  XP_022923397.1 368 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPIGKPLQRAAFYFKEALQLLLLM--NNPVNPPPPRCPTPFDVIFKMGAYKVFCEISPLVQFVNF 460
                     679*************************************************98..6667788888888999*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t+Nqa+lea++   r+Hi+Dfdi+ G+QW++++q+L+ R++g +sl+iT+++sp++++  el  ++e+L++fA+ +g++fef+++   ++++l+ 
  XP_022923397.1 461 TCNQALLEALDDVGRIHIVDFDIGFGAQWASFMQELSLRNQG-ASLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEMI---NFDSLNQ 551
                     ***************************************888.89***************************************9...5555544 PP

            GRAS 192 eeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +++     r +++Ea+aVn+ l   ++ ++++ l+s    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y  l++sl+a    +s++
  XP_022923397.1 552 NSFslpfsRANENEAIAVNFPL--CSTSNQPALLPS----LLRFIKQLSPKLVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAI-NMNSDA 639
                     4442233344459******998..666667888887....*********************************************887.7899** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +k+Er+ll+++i++ v  + ++     e++  W+  + +aGF+pv++s+++++qa+++ ++++++g++ve++++slvl+W++r+L+s+SaWr
  XP_022923397.1 640 VNKIERFLLQPRIESTVLGRLRA----PERMPLWKTLFASAGFTPVNFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWR 728
                     ******************99998....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    
MRGISFHFQG KGDLEISAAL SSSPICSGFA EKWVKKGEEH QELEEQQEGF SYFLLPNNEP  60
TSVLHMRSPS PPTSVSTLSS SFGGGGGGGG GCVPSLPPET PSVEPLAGAG VGNAIFSSGL  120
EDLESMWSET AGPEQSFLRW IAGDVEDSSM GSKNPFDLDG NAGIGIVEQG SEFGGGAGNV  180
LANINPNLSF PVPACGGANY KSSSLGMNNR HGNLNLQSPI FNGSLENLVV PVSGLIQPFE  240
RPDEKPQSLN AAQVLLNQHQ PPQNPSFFVP LMFGQQEQQL QPQLKRHNSS GALDANPNGS  300
IPIPNEILMR NHQVQVLQQQ QQQQQLGYAP GLQCLPQQKA MSPKPKVVGL GDEMVYNNPP  360
QQQQHALLDQ LYKAAELVGT GNFSHAQGIL ARLNHQLSPI GKPLQRAAFY FKEALQLLLL  420
MNNPVNPPPP RCPTPFDVIF KMGAYKVFCE ISPLVQFVNF TCNQALLEAL DDVGRIHIVD  480
FDIGFGAQWA SFMQELSLRN QGASLKITAF ASPSTHHPIE LGLMRENLTQ FANDIGISFE  540
FEMINFDSLN QNSFSLPFSR ANENEAIAVN FPLCSTSNQP ALLPSLLRFI KQLSPKLVVS  600
LDRGCDRSDL PFPQHMLQAL QSYINLLESL DAINMNSDAV NKIERFLLQP RIESTVLGRL  660
RAPERMPLWK TLFASAGFTP VNFSNFTETQ AECVAKRTSV RGFHVEKRQA SLVLCWQRRE  720
LISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-121GRAS family protein