PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022923268.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 362aa    MW: 41532.8 Da    PI: 7.2242
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022923268.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.92.5e-12263611373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 
                     +++lL++cA+++s++d+  a+++L+ +s ++sp+gd++qRl +yf   L+++l             s++s++  ++   + +  +++++P+++f+
  XP_022923268.1   6 MRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHHLPC-----------SSSSSSLqQDGLQSCYLSLNQITPFIRFC 89 
                     589************************************************9987...........222222203344455666*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vak.r 185
                     hltaNqaIlea+e + +vH++Dfdi +G+QWp+L+qaLa+R + +p+lRiT++g     + ++l +tg+rL+kfA++lg++f+f++l     + +
  XP_022923268.1  90 HLTANQAILEAIEDCGMVHVVDFDIIHGVQWPPLMQALAERFA-SPMLRITAIGL----DLTSLLKTGDRLSKFAHSLGLRFHFHPLlllN-DhD 178
                     *****************************************65.59*********....9**************************97633.348 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                     ++ l + +L + p+EalaVn+vl lhrll+      +  +++L+ +k l+Pkvv+++e+ea+ n++ F++rfleal++ys +fdslea++p++s+
  XP_022923268.1 179 VDRLVPAALTLFPDEALAVNCVLYLHRLLK------DDVRRLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSK 267
                     99999***********************93......33457****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     er  vE++++grei +vv+ eg++rr+rhe++e+W+ +l++ GF+++pls +a +qaklllr ++ s+gy+++  ++sl lgW++rpL+svS+W
  XP_022923268.1 268 ERLEVEKVWFGREIDDVVSEEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYpSEGYHLQTLHDSLSLGWQNRPLFSVSSW 361
                     ********************************************************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MDPFQMRQLL IRCAHFISQS DFLSAHRFLS IISSNSSPYG DATQRLLHYF SSSLSHHLPC  60
SSSSSSLQQD GLQSCYLSLN QITPFIRFCH LTANQAILEA IEDCGMVHVV DFDIIHGVQW  120
PPLMQALAER FASPMLRITA IGLDLTSLLK TGDRLSKFAH SLGLRFHFHP LLLLNDHDVD  180
RLVPAALTLF PDEALAVNCV LYLHRLLKDD VRRLLHKIKA LNPKVVTIAE KEANFNHPLF  240
MQRFLEALNH YSLIFDSLEA TMPQNSKERL EVEKVWFGRE IDDVVSEEGN KRRQRHERYE  300
SWEIMLKSLG FSNIPLSPFA LSQAKLLLRL HYPSEGYHLQ TLHDSLSLGW QNRPLFSVSS  360
WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-114GRAS family protein