PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022922508.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 519aa MW: 56357.7 Da PI: 5.3948

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022922508.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	335	383	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_022922508.1 335 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 383 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MNGKDEFEDE CRTSDPMSIS SSWQFANESI GFVSTGNPSV VSNGDLGVSS CPSTSMSNLF 60 TPTVLNDHTN SQSSRFCSSF NEQNSIDDSN VTVVDGEGLS SLRSSSDRIL GMDWNQQSSW 120 MKGVFSGNVP GMFPANLSQL PADSAFIERA ARFSCFNGGV FGAPPAGSFG ISGSNGIHSR 180 GAFGSQELNK VVLEGKEKSP PKTEKESEMS RDRAKQGCVG ESGNESDETG FSGGQDEQCT 240 LGGTIAEPSR EGLCFKKRKR GDRNMELAQV KEASKQINET AKNGALTWQN GDKDQNPSFT 300 TNKAAGKQGK QDSQPSDAPK EEYIHVRARR GQATNSHSLA ERVRREKISE RMRLLQDLVP 360 GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPKL DFNIEELLTK EIMQSKAGPS 420 LFGFPPDLPM PYLPQHPTHH GVIPPCIPNM GSSPDLLRRT INSQLTSLVG GFKEPVQLLN 480 VWENELHNVV PRNFDVAAPP SGQDVDGSTP PCNNTRAEP

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MNGKDEFEDE CRTSDPMSIS SSWQFANESI GFVSTGNPSV VSNGDLGVSS CPSTSMSNLF  60
TPTVLNDHTN SQSSRFCSSF NEQNSIDDSN VTVVDGEGLS SLRSSSDRIL GMDWNQQSSW  120
MKGVFSGNVP GMFPANLSQL PADSAFIERA ARFSCFNGGV FGAPPAGSFG ISGSNGIHSR  180
GAFGSQELNK VVLEGKEKSP PKTEKESEMS RDRAKQGCVG ESGNESDETG FSGGQDEQCT  240
LGGTIAEPSR EGLCFKKRKR GDRNMELAQV KEASKQINET AKNGALTWQN GDKDQNPSFT  300
TNKAAGKQGK QDSQPSDAPK EEYIHVRARR GQATNSHSLA ERVRREKISE RMRLLQDLVP  360
GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPKL DFNIEELLTK EIMQSKAGPS  420
LFGFPPDLPM PYLPQHPTHH GVIPPCIPNM GSSPDLLRRT INSQLTSLVG GFKEPVQLLN  480
VWENELHNVV PRNFDVAAPP SGQDVDGSTP PCNNTRAEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	3e-86	bHLH family protein