PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022922320.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 586aa    MW: 64191.6 Da    PI: 5.6736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022922320.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.45.1e-1032305865374
            GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                     ++e+A a+s+g+le ++++L       +p   ++ +la +++ AL++r++      ++ +pp   +    +e++aa++l+++vsP++k+++++aN
  XP_022922320.1 230 VIEAAAAISDGKLEGIDEIL-------APVVVSNSKLAEFMVFALKSRVNP-----VE-FPPPVME-IYGEEHTAATQLLYDVSPCFKLAFMAAN 310
                     55666666666655555555.......566677889**************9.....33.3333332.35999*********************** PP

            GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                      aIlea+ ++ +++H++Dfdi++G+Q+++L++ L++R++g+ s+++T+v+++esg +e+l+++ge L+++A+elgv fefn+ v ++l++l+ e 
  XP_022922320.1 311 LAILEAIGEDdRKMHVVDFDIGKGGQYMNLIHLLSNRQKGKVSVKLTAVVAAESGGEERLKQVGESLSQLADELGVGFEFNI-VRHKLAELTREL 404
                     *******9886889*******************************************************************9.799********* PP

            GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                     L ++p+E laVn++++l+r++desvs+e++rde+L+ vksl P+vv+v+eqe+++n+++F +r++e++ yys+lf+s+++++ r++ +r+kvE  
  XP_022922320.1 405 LGCEPDELLAVNFAFKLYRMPDESVSTENPRDELLRSVKSLAPTVVTVMEQELNMNTAPFKARVAESCIYYSSLFESIDSTMQRDHPDRVKVEDG 499
                     *********************************************************************************************** PP

            GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +gr++ n +aceg++r+er+e ++kWr+r+++aGF++ p+s+++a+++k+ l+  +  + g++v+ee+g +++gW++r+L++++aWr
  XP_022922320.1 500 -IGRKLANSLACEGRDRVERCEVAGKWRARMGMAGFEARPISQTVAESMKTRLSSGYrvNPGFTVKEENGGICFGWMGRTLTVTTAWR 586
                     .*************************************************99887655889**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    
MQSGFTGGGA PDFYTAGRSI PNPSQPNPYR SQLPGGAFLD PTAAQIGRQI PSSLLGKRNL  60
ADLQHTHHHS LPLNNLFLRS VKPRAFAHPI SPLSNLDFYS TMSLPSPDVQ SHRLYGTSSA  120
ALLQQFRQQP NGVVPARDLQ SLDSEKKMIM NHRLQELEKE LLEDIDDDDG SDAVSVITNS  180
NSPWCETIYN LINPTVAQNP SPTSSASSSC SSSTSSSVAS KASDSWKQSV IEAAAAISDG  240
KLEGIDEILA PVVVSNSKLA EFMVFALKSR VNPVEFPPPV MEIYGEEHTA ATQLLYDVSP  300
CFKLAFMAAN LAILEAIGED DRKMHVVDFD IGKGGQYMNL IHLLSNRQKG KVSVKLTAVV  360
AAESGGEERL KQVGESLSQL ADELGVGFEF NIVRHKLAEL TRELLGCEPD ELLAVNFAFK  420
LYRMPDESVS TENPRDELLR SVKSLAPTVV TVMEQELNMN TAPFKARVAE SCIYYSSLFE  480
SIDSTMQRDH PDRVKVEDGI GRKLANSLAC EGRDRVERCE VAGKWRARMG MAGFEARPIS  540
QTVAESMKTR LSSGYRVNPG FTVKEENGGI CFGWMGRTLT VTTAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-159GRAS family protein