PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022921606.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 859aa    MW: 95290.1 Da    PI: 6.2771
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022921606.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.8e-24149250199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_022921606.1 149 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 240
                     99*****************************7333.34459************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_022921606.1 241 GELRVGVRRA 250
                     99*****996 PP
2Auxin_resp120.41.4e-39275357183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++++GmRfkm+fe+e+++e+r++Gt++g +d+dp rW++SkWr+Lk
  XP_022921606.1 275 AWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLK 357
                     89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    
MASSEVSINP NSASVPFNDH ADSTKLTSDP PNALSARDAD FALFTELWNA CAGPLVSVPR  60
ENDRVFYFPQ GHIEQVEAST SQVADQQMPV YDLPSKILCR VINVHLKAEP DTDEVFAQIT  120
LVPEANQDEH AVDKEPPPPP PRRFHVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM  180
SRQPPTQELV AKDLHGNEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG DAFIFLRGEN  240
GELRVGVRRA MRQHGNVPSS VISSHSMHLG VLATAWHAIS TGTMFTVYYK PRTSPSEFIV  300
PYDQYMESIK KSYTIGMRFK MRFEGEEAPE QRFTGTIIGC EDADPKRWKD SKWRCLKVRW  360
DETSTISRPE KVSPWKIEPA LAPPALNPLP MTRPKRPRSN MVPTSPDSSV LTREGSSRVT  420
VDPSPVSAFT RVLQGQEFST LRGNFIDGND PDAAEKSVMW PPSLDDEKID VVSTSKKHGA  480
DCWITPGRSE PTYADLLSGF GTNLDSSHGV RAGMGDPAVV TANSIRKHVM DQDGKFNFLG  540
GSSWSVLPSG LSLNLVDSSQ KGHIQAGDLS YQVRGNATFN GFGDHSVAHC HRTEQPHGNW  600
LMAPLSSHFD YPVQSTELMS MPMVFQNQDI MKPKDGNCKL FGISLIKNPA IPDSAGLNRN  660
MNGADVTHLN IHQIHSNESD LKSEPSRGSM LADKSLAIND ADKLQQTCTQ NLKDAHCKSQ  720
GTSARSCTKV QKQGIALGRS VDLSRFNNYD ELVAELDQLF EFGGELLAPK KNWLIVYTDD  780
EGDMMLVGDD PWQEFCGMVR KIFIYTREEV QKMNRGSLNL EGDENPSVEG KEAKEIEGFW  840
CGTEGVEQSN AARPEGCGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein