PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022921420.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 375aa MW: 41813.4 Da PI: 7.6646

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022921420.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	86	162	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dl++ ++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_022921420.1 86 CLVDGCVSDLNNYRDYHRRHKVCELHSKTPQVTIGGRKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQS 162 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MDWNLKTPSW DFTQLEQDVL KNINTIGASS SFVEDRTTSG DFSIDLKLGQ VSNLGTKYAV 60 NEPGVLKMEP SKRARGSGNG AQPLSCLVDG CVSDLNNYRD YHRRHKVCEL HSKTPQVTIG 120 GRKQRFCQQC SRFHSLEEFD EGKRSCRKRL DGHNRRRRKP QSDSLSRSIL SHYQGSQLLP 180 FSSSHVYPST IVMNHSWRGI SNTEIDPRLH VQQEPIHFPD KHDIYLGASS NDSIHKIEKQ 240 VAFLQSDNPG SSVGLPFVRT IDFSENGSSR SKMFYDRFTT PSPGHESDGA LSLLSSLQTQ 300 SSGIGFNQAE QDRHLISFLQ PLDVSLGHHN RLETASSVLN GCVSNADMNC SGMFHAASND 360 GGNEAPPPSL PFHWQ

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MDWNLKTPSW DFTQLEQDVL KNINTIGASS SFVEDRTTSG DFSIDLKLGQ VSNLGTKYAV  60
NEPGVLKMEP SKRARGSGNG AQPLSCLVDG CVSDLNNYRD YHRRHKVCEL HSKTPQVTIG  120
GRKQRFCQQC SRFHSLEEFD EGKRSCRKRL DGHNRRRRKP QSDSLSRSIL SHYQGSQLLP  180
FSSSHVYPST IVMNHSWRGI SNTEIDPRLH VQQEPIHFPD KHDIYLGASS NDSIHKIEKQ  240
VAFLQSDNPG SSVGLPFVRT IDFSENGSSR SKMFYDRFTT PSPGHESDGA LSLLSSLQTQ  300
SSGIGFNQAE QDRHLISFLQ PLDVSLGHHN RLETASSVLN GCVSNADMNC SGMFHAASND  360
GGNEAPPPSL PFHWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	160	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-60	SBP family protein