PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR97518.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 186aa MW: 21815.7 Da PI: 4.9266

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR97518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.8	5.1e-40	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC++lrr+C+++C lapyfpae++ +f vhk+FGasnv+k+l+ l+e+ reda++s+vyeA+ar+rdPvyG+++vi lq++++ l+a+l+++ke RWR97518.1 14 PCAACRMLRRRCSDSCLLAPYFPAEETDNFIHVHKVFGASNVIKTLQMLDESSREDAVKSMVYEAKARLRDPVYGCTRVICFLQKHVKDLEAQLEMTKE 112 7**********************************************************************************************9998 PP DUF260 100 e 100 + RWR97518.1 113 Q 113 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MDLQMQMRMR TNQPCAACRM LRRRCSDSCL LAPYFPAEET DNFIHVHKVF GASNVIKTLQ 60 MLDESSREDA VKSMVYEAKA RLRDPVYGCT RVICFLQKHV KDLEAQLEMT KEQFVESKAQ 120 RDQLLEIFMD ANRFKSTAPI NNEVFDRYDW NWDDNTFGCD PFEYSTDLFY ENLGFQDQHG 180 QTSCLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-45	LBD family protein