PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR97497.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family ARF
Protein Properties Length: 826aa    MW: 91634.5 Da    PI: 6.7248
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR97497.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.57e-25141242199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++      +++ +++ +lt +d++g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +++el+
  RWR97497.1 141 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyELQRPCQ-ELTAKDLHGNEWKFRHIYRGQPRRHLLTTGWSTFVNKKKLVSGDAVLFL--RGEDGELR 236
                 99*****************************98888885.*************************************************..4499999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  RWR97497.1 237 LGLRRA 242
                 *99986 PP
2Auxin_resp113.32.2e-37267348182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a+s+ksvF+++YnPras+seF+v+++k++k+++ ++svGmRfk ++eted++ +r++G+++g+ d+dp +Wp+SkWr+L
  RWR97497.1 267 VANAISSKSVFHIYYNPRASASEFIVPYRKFSKSFDYSFSVGMRFKTQLETEDAADQRYTGLITGIGDIDPAKWPGSKWRCL 348
                 689******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    
MGIDLNCIDD EALEDPPANS SPSLSGSPSS SAICLELWHA CAGPLISLPR KGSFVVYFPQ  60
GHLEQIADYF PSVAYDIPPH VFCRVIDVKL HAEAATDEVY AQVSLFPESE QLEKKVQAGE  120
VERDGEEGIE GFSKSITPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYELQRPCQE  180
LTAKDLHGNE WKFRHIYRGQ PRRHLLTTGW STFVNKKKLV SGDAVLFLRG EDGELRLGLR  240
RAVQLKGGNP FSVLRGQRLG LGTFASVANA ISSKSVFHIY YNPRASASEF IVPYRKFSKS  300
FDYSFSVGMR FKTQLETEDA ADQRYTGLIT GIGDIDPAKW PGSKWRCLVV KWENDVGSKR  360
QNRISPWEIE PSSSILGSGD SSLPGSKRTK FGMHSVEGDL PVPNGNGFPD FGESLRFQKV  420
LQGQEIMGFR TPYDGFDVSN HQKPEMRGFI PDPNTSWATG MGNSVRIPQI NPDTPCKSIG  480
FGASLGFQKV LQGQEIVPLK PPCREGEVDT WAHENGGFGN FEGANVHSTR SRKPMLLQGY  540
YHTQLHPQKQ SVQVPSPSSV LMFHQASTQS LSPDFKYGMN NKNRREDGIY FGHFEHSQNG  600
PHQAIQDLKR MYPYHISIEQ NQPRTVHTSL LSKAECRDSP GVLPTVKNGC RLFGFPLTKE  660
APVNELDVPL IASPSLTEDL SLEATLPGMG WETMERQSHP IPQGLTKSVA RGCTKVHKQG  720
SVVGRVIDLS KLDGYDGLIT ELERLFNMKG LLNNPEKGWQ VVYKDDEDDM ILVGDDPWKE  780
FCSIVSKIVI YAHDKVVLTA PRLCGDEIHS SSEAAPTSVH ASKFSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.11e-169ARF family protein