PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR97476.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 480aa MW: 52436.6 Da PI: 5.5755

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR97476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.5	3.4e-36	155	262	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssasec..eaesssssasnsssg........ 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el ++ ++s++ +++++++ ++ + + RWR97476.1 155 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIKFYDVQDRLGYDRPSKAVDWLIKNAKPAIDELEQLppW--KPSATnaNEVAQQVFDD--G-Rmreieanv 248 79**************************************************************552..33333112222222222..1.123344455 PP TCP 89 .............k 89 + RWR97476.1 249 vgkkafeaagyaiQ 262 55444333344331 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MIDQDSSVLS DQLSDVTGSL GWEEEEEEQQ QQGGEKPVRK RPRNQNLEER IRRRTALDPL 60 KKTIQPILNS VTQVEIEEED EDDEEEEEEE QAYKHPSPPK KRSFFQPSSS SEHAHFDMGE 120 NHRQNQSSAA GRMSVRNAGV GEIVEVEGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 180 TAIKFYDVQD RLGYDRPSKA VDWLIKNAKP AIDELEQLPP WKPSATNANE VAQQVFDDGR 240 MREIEANVVG KKAFEAAGYA IQANPSAENS SFLPPSLDSF FPIGSSSTSS SSSASIHLQS 300 RQNQDLRLSL QSFQDPLLLQ HQHHHSSPSG EQALFAGSAP MAFDVSAASV GWSQQEMSRF 360 QRLIAWNAAE GSGGGGGGGG GYVFPASSQL PVPLMLQNPF FSQRGPLQSS NSPSVRAWAD 420 LPPVSAGEHQ LHQPSVSSVP AVRFASGGFS GFHVPARIQG DEEQDGGGDK LSSVSSAPHH

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MIDQDSSVLS DQLSDVTGSL GWEEEEEEQQ QQGGEKPVRK RPRNQNLEER IRRRTALDPL  60
KKTIQPILNS VTQVEIEEED EDDEEEEEEE QAYKHPSPPK KRSFFQPSSS SEHAHFDMGE  120
NHRQNQSSAA GRMSVRNAGV GEIVEVEGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH  180
TAIKFYDVQD RLGYDRPSKA VDWLIKNAKP AIDELEQLPP WKPSATNANE VAQQVFDDGR  240
MREIEANVVG KKAFEAAGYA IQANPSAENS SFLPPSLDSF FPIGSSSTSS SSSASIHLQS  300
RQNQDLRLSL QSFQDPLLLQ HQHHHSSPSG EQALFAGSAP MAFDVSAASV GWSQQEMSRF  360
QRLIAWNAAE GSGGGGGGGG GYVFPASSQL PVPLMLQNPF FSQRGPLQSS NSPSVRAWAD  420
LPPVSAGEHQ LHQPSVSSVP AVRFASGGFS GFHVPARIQG DEEQDGGGDK LSSVSSAPHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	3e-58	TCP family protein