PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96954.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 546aa MW: 62365.6 Da PI: 4.5589

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.9	6.2e-12	193	216	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C f++rtGtCk+G +CkF+H+p RWR96954.1 193 PDCLFYLRTGTCKFGLNCKFNHPP 216 89********************97 PP
2	zf-CCCH	32	2.1e-10	265	290	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G C+++H++ RWR96954.1 265 GQPECKYYLKTGGCKFGKACRYNHPR 290 689*********************96 PP
3	zf-CCCH	32.5	1.5e-10	311	335	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++rtG Ck+ +C+F+H+ RWR96954.1 311 GEKECPFYMRTGSCKFATNCRFHHP 335 7899********************9 PP
4	zf-CCCH	24.9	3.6e-08	456	481	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+f+++tG Ck+ + C+++H++ RWR96954.1 456 GQQECQFYMKTGNCKFKSACRYHHPK 481 6789********************96 PP
5	zf-CCCH	30.9	4.6e-10	506	527	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++ r+G+Ck+G+ Ck+ H+ RWR96954.1 506 ICMHYNRYGICKFGPACKYDHP 527 6********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MGGSEDGDPP KMEEELGLGL QSTARPPSPS IDSAIASLNE EFQDLGLKEN SHCIESESAS 60 SKEEEEEKDS DFKKEEEEKD SHSKEEKEEY EKDSDLKSEK EEEEKDSDLK EEKEEEEKDS 120 DLKSEKEEEE KDSDLKDEKE EEEKDSDLKE KKEEEEKDSD LKEQEQEEEK DSDSKEEEKK 180 DGRFQYPIRR AEPDCLFYLR TGTCKFGLNC KFNHPPRQRN QVGTEGKWNE KENEKEEGKE 240 KEKEENEDKY EGNEHENEEF PEREGQPECK YYLKTGGCKF GKACRYNHPR EKAGVGEPVE 300 LNFLGLPMRP GEKECPFYMR TGSCKFATNC RFHHPDPTAV GGCDPLPVYQ NDSSVTLHAS 360 RASPPLPTAW SRTSNERVPY MEASPPPYVP VMLPPPHVVH PNPDWNGFMG PGSALYPPER 420 NLRPPSASAM IDLTKKADSS IRQHQPMVEE FPERPGQQEC QFYMKTGNCK FKSACRYHHP 480 KSRLSNSPAT CVLSSMGLPL RPDQMICMHY NRYGICKFGP ACKYDHPINY GPGTPVTSAT 540 NQTPLD

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MGGSEDGDPP KMEEELGLGL QSTARPPSPS IDSAIASLNE EFQDLGLKEN SHCIESESAS  60
SKEEEEEKDS DFKKEEEEKD SHSKEEKEEY EKDSDLKSEK EEEEKDSDLK EEKEEEEKDS  120
DLKSEKEEEE KDSDLKDEKE EEEKDSDLKE KKEEEEKDSD LKEQEQEEEK DSDSKEEEKK  180
DGRFQYPIRR AEPDCLFYLR TGTCKFGLNC KFNHPPRQRN QVGTEGKWNE KENEKEEGKE  240
KEKEENEDKY EGNEHENEEF PEREGQPECK YYLKTGGCKF GKACRYNHPR EKAGVGEPVE  300
LNFLGLPMRP GEKECPFYMR TGSCKFATNC RFHHPDPTAV GGCDPLPVYQ NDSSVTLHAS  360
RASPPLPTAW SRTSNERVPY MEASPPPYVP VMLPPPHVVH PNPDWNGFMG PGSALYPPER  420
NLRPPSASAM IDLTKKADSS IRQHQPMVEE FPERPGQQEC QFYMKTGNCK FKSACRYHHP  480
KSRLSNSPAT CVLSSMGLPL RPDQMICMHY NRYGICKFGP ACKYDHPINY GPGTPVTSAT  540
NQTPLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	5e-89	C3H family protein