PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR96436.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 608aa MW: 67598.8 Da PI: 7.0712

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR96436.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	445	491	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq RWR96436.1 445 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITELQ 491 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MKTEMGMGRF WSEEDRKMVV SVMGSVAFEY LTTSNVSSDG LLTASDANLQ NKLSELVEGS 60 HSSNLGWNYA IFWQISRSKS GDLVLGWGDG YCREPKEGEE TETRVLNLRL DEDDSQQKLR 120 KRVLQKLHTF FGGTDEDSYA FGLDRVSDTE MFFLTSMYFS FPRGEGAPGK AFGSGHQLWL 180 PNALKSSTDY CVRSFLARSA GIQTVVLIPI ETGVIELGSL RSIPENLEVL HRIKSVFSRS 240 RKDESVSAPS FGFGGEQVVE DYPKIFGQDL NPSRGNEKLV VTKVEERPWD VYPSSNRMQF 300 LRKGFHGLNW NQIQSPKSAA EVYASHAQAN NAQKFNNGVL VMGSGDVDSA APASYAHANG 360 VRDDPRMSPF QPQKQQQQQQ QRQIDFSGTT SRVGPVVARP VPVESEQSDM EASCKDERAG 420 AGQADERRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL 480 GDAITYITEL QKRLKEMESE KERFGGAMRD AASEGNSGEN RKRVSPPPDI DIQAGRDEVI 540 VKVSCPLDTH PVSKVIQAFK EAQITVVESK ISAGNDSIFH TFVVKSQGSE QLTKEKLAAA 600 LARESNAL

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MKTEMGMGRF WSEEDRKMVV SVMGSVAFEY LTTSNVSSDG LLTASDANLQ NKLSELVEGS  60
HSSNLGWNYA IFWQISRSKS GDLVLGWGDG YCREPKEGEE TETRVLNLRL DEDDSQQKLR  120
KRVLQKLHTF FGGTDEDSYA FGLDRVSDTE MFFLTSMYFS FPRGEGAPGK AFGSGHQLWL  180
PNALKSSTDY CVRSFLARSA GIQTVVLIPI ETGVIELGSL RSIPENLEVL HRIKSVFSRS  240
RKDESVSAPS FGFGGEQVVE DYPKIFGQDL NPSRGNEKLV VTKVEERPWD VYPSSNRMQF  300
LRKGFHGLNW NQIQSPKSAA EVYASHAQAN NAQKFNNGVL VMGSGDVDSA APASYAHANG  360
VRDDPRMSPF QPQKQQQQQQ QRQIDFSGTT SRVGPVVARP VPVESEQSDM EASCKDERAG  420
AGQADERRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL  480
GDAITYITEL QKRLKEMESE KERFGGAMRD AASEGNSGEN RKRVSPPPDI DIQAGRDEVI  540
VKVSCPLDTH PVSKVIQAFK EAQITVVESK ISAGNDSIFH TFVVKSQGSE QLTKEKLAAA  600
LARESNAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	427	435	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-170	bHLH family protein