PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95938.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 339aa MW: 37498 Da PI: 7.4085

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	187	241	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k RWR95938.1 187 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 241 778899***********************************************98 PP
2	HD-ZIP_I/II	127.8	4.5e-41	187	277	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L+ke +eLr +lk RWR95938.1 187 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELR-ALK 277 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MELGLSLGEA PKPFAFMEKS TKTNKGLEFC MGLGVGLNTR EGKEAADQRH SIPRRSEDGE 60 EGRDKTVSAN PPVQLDLLPL APVPRYTSSQ LPFPWPVDHG NSDGCSSGQA ATTRGFDVNL 120 LPSTDEIDDA AAVDSPNSIA SSFQMEFSIY RGSKRDRESS AAPAANDCEA ERASSRASDE 180 EENGLTRKKL RLSKEQSAFL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRART 240 KLKQTEVDCE YLKRCCETLT EENRKLHKEL QELRALKTSH PFYMQLPATT LTMCPSCERV 300 ATTTTPAAAD GAAKTGGFPA VSKPRFYPFS QQPHQSTAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	192	TRKKLRL
2	236	244	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-74	HD-ZIP family protein