PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95773.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SRS

Protein Properties

Length: 346aa MW: 36200 Da PI: 8.0325

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95773.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.3	3.3e-67	136	292	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 g+++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++aa + +a +++++k++r s++++++s+t++s+++++++++ RWR95773.1 136 GGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQITAAAVAGSA---GSTSSAKKPRLI-SSQTTTTSHTSTSNTTPPRSFD 230 5788********************************************87777764333...356677888865.88899999********** PP DUF702 102 tss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 t s lP +v+ +avf+cvrv+s+ddge+e+aYq++v+igGhvfkG+Lyd+G+e RWR95773.1 231 TGSshqdatfresLPGQVRLPAVFKCVRVTSIDDGEDEYAYQAVVKIGGHVFKGFLYDHGVE 292 99999*****************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGMVGVRDVF VVAPAASFHH QHHHHQYHDQ ILADHSTAAV NNAAAASNSN ATALGVGVIP 60 LLAATPCLVE ESETAAHSRK VHHLWQTHHQ MQQGEVSFFK KNVQMEENSN SGANVGGGGG 120 NVLGGGSGIG AMGMGGGGTT CQDCGNQAKK DCSHRRCRTC CKSRGFDCAT HVKSTWVPAA 180 RRRERQITAA AVAGSAGSTS SAKKPRLISS QTTTTSHTST SNTTPPRSFD TGSSHQDATF 240 RESLPGQVRL PAVFKCVRVT SIDDGEDEYA YQAVVKIGGH VFKGFLYDHG VEGRDSLPNI 300 SDLHLGGPSA RNGASSSSFP ALEPPDVYAT SSGGLLGGTN YGNPLN

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGMVGVRDVF VVAPAASFHH QHHHHQYHDQ ILADHSTAAV NNAAAASNSN ATALGVGVIP  60
LLAATPCLVE ESETAAHSRK VHHLWQTHHQ MQQGEVSFFK KNVQMEENSN SGANVGGGGG  120
NVLGGGSGIG AMGMGGGGTT CQDCGNQAKK DCSHRRCRTC CKSRGFDCAT HVKSTWVPAA  180
RRRERQITAA AVAGSAGSTS SAKKPRLISS QTTTTSHTST SNTTPPRSFD TGSSHQDATF  240
RESLPGQVRL PAVFKCVRVT SIDDGEDEYA YQAVVKIGGH VFKGFLYDHG VEGRDSLPNI  300
SDLHLGGPSA RNGASSSSFP ALEPPDVYAT SSGGLLGGTN YGNPLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	1e-74	SRS family protein