PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95686.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 23946.1 Da PI: 8.6451

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95686.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5e-19	49	101	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le F ++r++ +++ +LA++lgL+ rqV vWFqNrRa++k RWR95686.1 49 KRKLSAEQVNFLEMNFGNERKLESSRKVHLASELGLDPRQVAVWFQNRRARWK 101 56899***********************************************9 PP
2	HD-ZIP_I/II	123.6	9.5e-40	48	139	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv++LE++F +e+kLe++rKv+la+eLgl+prqvavWFqnrRAR+k+kqlE++y++Lk+ +da++ e+++Le+ev +Lr++l++ RWR95686.1 48 KKRKLSAEQVNFLEMNFGNERKLESSRKVHLASELGLDPRQVAVWFQNRRARWKSKQLEEEYKKLKTMHDAVVMEKCQLEAEVLRLRDQLSD 139 9***************************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MNQEEQMLLF SELWSELYDH QVTEGGERRP RRRRKKGEKG EKEMAGFKKR KLSAEQVNFL 60 EMNFGNERKL ESSRKVHLAS ELGLDPRQVA VWFQNRRARW KSKQLEEEYK KLKTMHDAVV 120 MEKCQLEAEV LRLRDQLSDA EKEVKKLSER RNGSPKGERS CSPSSSFSMD TPFLGEFGED 180 PFYVHENIYI NNGMEWVNYY NI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	33	RRPRRR
2	28	36	RRPRRRRKK
3	31	51	RRRRKKGEKGEKEMAGFKKRK
4	32	52	RRRRKKGEKGEKEMAGFKKRK
5	33	52	RRKKGEKGEKEMAGFKKRKL
6	33	53	RRRRKKGEKGEKEMAGFKKRK
7	34	53	RRKKGEKGEKEMAGFKKRKL
8	34	54	RRRRKKGEKGEKEMAGFKKRK
9	35	54	RRKKGEKGEKEMAGFKKRKL
10	96	104	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	5e-52	HD-ZIP family protein