PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95315.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 381aa MW: 41171.7 Da PI: 8.3091

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95315.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.6	3.2e-11	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+C yG+rC+++H++ RWR95315.1 54 PGEPDCGFYMRNGFCGYGARCRYNHPR 80 5789*********************96 PP
2	zf-CCCH	39.2	1.2e-12	102	126	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ RWR95315.1 102 QPVCQYFMKTGTCKFGSSCKYHHPR 126 689********************96 PP
3	zf-CCCH	35.4	1.8e-11	147	172	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G CkF+H++ RWR95315.1 147 DEKECSYYVKTGHCKFGVACKFHHPQ 172 6789********************97 PP
4	zf-CCCH	37	5.7e-12	301	324	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f++rtG Ck+G+ C+++H+p RWR95315.1 301 LECQFYMRTGDCKFGSACRYHHPP 324 58********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MYGRIRPSME GSASDPPGDW NAPAPETGLQ ESMLQLELGG GGAGDPSMLY PVRPGEPDCG 60 FYMRNGFCGY GARCRYNHPR DRGTVTGAVR SGAGEYPERV GQPVCQYFMK TGTCKFGSSC 120 KYHHPRHGGL SSSMVSLNYY GYPLRPDEKE CSYYVKTGHC KFGVACKFHH PQPLGIEMPS 180 SAPTFYPTVQ PPPVPSPSVA GWQVVRPPLM PTSYVQGPYP VLLSPGVVQI PGWSHYPPPA 240 SPAASPGTQH AVGTGLLYGL TQQLSPSAPA YPGPFSSVSS SAGPSTSSQK EHMFPERPGQ 300 LECQFYMRTG DCKFGSACRY HHPPEWSMPK TTCALNSEGL PLRPMIAGVT SPDPLHGHGL 360 WSLKAYITER RNDLLACVAN K

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MYGRIRPSME GSASDPPGDW NAPAPETGLQ ESMLQLELGG GGAGDPSMLY PVRPGEPDCG  60
FYMRNGFCGY GARCRYNHPR DRGTVTGAVR SGAGEYPERV GQPVCQYFMK TGTCKFGSSC  120
KYHHPRHGGL SSSMVSLNYY GYPLRPDEKE CSYYVKTGHC KFGVACKFHH PQPLGIEMPS  180
SAPTFYPTVQ PPPVPSPSVA GWQVVRPPLM PTSYVQGPYP VLLSPGVVQI PGWSHYPPPA  240
SPAASPGTQH AVGTGLLYGL TQQLSPSAPA YPGPFSSVSS SAGPSTSSQK EHMFPERPGQ  300
LECQFYMRTG DCKFGSACRY HHPPEWSMPK TTCALNSEGL PLRPMIAGVT SPDPLHGHGL  360
WSLKAYITER RNDLLACVAN K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-110	C3H family protein