PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR95314.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 479aa MW: 50676.9 Da PI: 8.1324 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.2 | 4.3e-11 | 55 | 81 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+C yG+rC+++H++ RWR95314.1 55 PGEPDCGFYMRNGFCGYGARCRYNHPR 81 5789*********************96 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 103 | 127 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ RWR95314.1 103 QPVCQYFMKTGTCKFGSSCKYHHPR 127 689********************96 PP | |||||||
3 | zf-CCCH | 35 | 2.4e-11 | 148 | 173 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G CkF+H++ RWR95314.1 148 DEKECSYYVKTGHCKFGVACKFHHPQ 173 6789********************97 PP | |||||||
4 | zf-CCCH | 36.6 | 7.6e-12 | 302 | 325 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f++rtG Ck+G+ C+++H+p RWR95314.1 302 LECQFYMRTGDCKFGSACRYHHPP 325 58********************97 PP | |||||||
5 | zf-CCCH | 34.3 | 4.1e-11 | 348 | 371 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C f+a+ G+Ck+G++CkF H++ RWR95314.1 348 QPCTFYAQHGICKFGSTCKFDHPM 371 69********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence |
MYGRIRPSME GSASDPPGEW NAPAAPETAL QESMLQLELG GGGAGDPSLL YPVRPGEPDC 60 GFYMRNGFCG YGARCRYNHP RDRGTVTGAV RSGGGEYPER VGQPVCQYFM KTGTCKFGSS 120 CKYHHPRHGG LSSSMVSLNY YGYPLRPDEK ECSYYVKTGH CKFGVACKFH HPQPLGIEMP 180 SSAPTFYPTV QPPPVPSPSV AGWQVVRPPL MPTSYVQGPY PVLLSPGVVQ IPGWSHYPPP 240 ASPAASPGTQ HAVGTGLLYG LTQQLSPSAP AYPGPFSSVS SSAGPSTSSQ KEHMFPERPG 300 QLECQFYMRT GDCKFGSACR YHHPPEWSMP KTTCALNSEG LPLRPGAQPC TFYAQHGICK 360 FGSTCKFDHP MGMLSYSSSA SSLADMAVAP YPIGSSMGTL APSSSSSELR PEFVAGSNRE 420 SFSSRIQSSE TMSSGSVGSI FSKGGASVPQ THAQISGQSS VPSSGGTSTG PASEKPSST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-136 | C3H family protein |