PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR95172.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 1039aa MW: 114921 Da PI: 6.6047

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR95172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	172	249	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adl++ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh ++efDe+krsCrrrLa+hn+rrrk+++ RWR95172.1 172 ICQVEDCGADLTNAKDYHRRHKVCEAHSKASQALVGNVMQRFCQQCSRFHLIQEFDEGKRSCRRRLAGHNRRRRKSHP 249 5**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1039 aa Download sequence
MEARIGSEGQ RFYALGAPDF MLKEKDWMGV GRKGVEWDLN DWRWDGDLFI ARPLNPITSD 60 CRSKQLFPAG AGISAGEGMS NGTRLLAGKG LSNSSSSCSD EIDVGSGKGK GELEKRRRVT 120 VVEEDELNEE PGALSLKLGG HVYPVTDADV VNWGERSGKK TKFQGANSSR SICQVEDCGA 180 DLTNAKDYHR RHKVCEAHSK ASQALVGNVM QRFCQQCSRF HLIQEFDEGK RSCRRRLAGH 240 NRRRRKSHPD TAGGSSLNDD RSSSYLLISL LRILSNLHSN SSDQAKDQDF LSHLLRNLAS 300 HGSTFDESNL SRLLQESQKI GTSVGTSSEA EPEPALLPNA IAHIAAQQSS TPLCNGIQNP 360 LARPINATEC VTVASSGMPQ KGVIICEAVE TEHIPSKITN GLPLKDSLPS KVKSTVERFK 420 LNNIDLNDIY DDSQDCMEGS ERLHSPVDLG TGCLDCPSCI PQDSHHSSPA QPSGNSDSAS 480 AQSPSSSNGD AQSRTDRIVF KLFGKDPNEF PLTLRAQILD WLSHSPTDIE SYIRPGCIIL 540 TVYLRLTESR WKELCCELSS SLHRLLDVSD DVFFTTGWIY ARLQHRVAFI YNGQVLLDTP 600 MLLKSLNHCS ILSVTPIAVS ASERANFMVK GFNLCRSTTR LLCAFDGEYL VQDMSNIPPE 660 DIDTLKEQDE FSCLSFSCSI PNATGRGFIE VEDHGLSSSF FPFIVAEQDV CSEIRMLESA 720 IDVDESNGTS QKIIDAAKAR THALDFLHEM GWLLRRSHLR SRSDRSLLDV FPFIRFKWLM 780 EFSMDHDWCS VVKKLLDVLF EGTVDAGGSS SVELALSDMG LLHKAVRRNC RPMVELLLRY 840 APDNAGHHHG QKVDGGSKNF LFRPDTLGPA SVTPLHIAAS RDDSENVLDA LTDDPGKVGV 900 EAWKSARDST GFAPEDYARL RGYFSYIHLV QKKINKRAEA RHVILDIRAG IQKPPNNFNS 960 NKLTGFETEK AIRTSCKVCT LPYSAYSNRN RSLLYRPAML SMVAIAAVCV CVGLFFHGPP 1020 EVLCVFPPFR WEMLGYGEI

Sequence ? help Back to Top

Protein Sequence Length: 1039 aa Download sequence

MEARIGSEGQ RFYALGAPDF MLKEKDWMGV GRKGVEWDLN DWRWDGDLFI ARPLNPITSD  60
CRSKQLFPAG AGISAGEGMS NGTRLLAGKG LSNSSSSCSD EIDVGSGKGK GELEKRRRVT  120
VVEEDELNEE PGALSLKLGG HVYPVTDADV VNWGERSGKK TKFQGANSSR SICQVEDCGA  180
DLTNAKDYHR RHKVCEAHSK ASQALVGNVM QRFCQQCSRF HLIQEFDEGK RSCRRRLAGH  240
NRRRRKSHPD TAGGSSLNDD RSSSYLLISL LRILSNLHSN SSDQAKDQDF LSHLLRNLAS  300
HGSTFDESNL SRLLQESQKI GTSVGTSSEA EPEPALLPNA IAHIAAQQSS TPLCNGIQNP  360
LARPINATEC VTVASSGMPQ KGVIICEAVE TEHIPSKITN GLPLKDSLPS KVKSTVERFK  420
LNNIDLNDIY DDSQDCMEGS ERLHSPVDLG TGCLDCPSCI PQDSHHSSPA QPSGNSDSAS  480
AQSPSSSNGD AQSRTDRIVF KLFGKDPNEF PLTLRAQILD WLSHSPTDIE SYIRPGCIIL  540
TVYLRLTESR WKELCCELSS SLHRLLDVSD DVFFTTGWIY ARLQHRVAFI YNGQVLLDTP  600
MLLKSLNHCS ILSVTPIAVS ASERANFMVK GFNLCRSTTR LLCAFDGEYL VQDMSNIPPE  660
DIDTLKEQDE FSCLSFSCSI PNATGRGFIE VEDHGLSSSF FPFIVAEQDV CSEIRMLESA  720
IDVDESNGTS QKIIDAAKAR THALDFLHEM GWLLRRSHLR SRSDRSLLDV FPFIRFKWLM  780
EFSMDHDWCS VVKKLLDVLF EGTVDAGGSS SVELALSDMG LLHKAVRRNC RPMVELLLRY  840
APDNAGHHHG QKVDGGSKNF LFRPDTLGPA SVTPLHIAAS RDDSENVLDA LTDDPGKVGV  900
EAWKSARDST GFAPEDYARL RGYFSYIHLV QKKINKRAEA RHVILDIRAG IQKPPNNFNS  960
NKLTGFETEK AIRTSCKVCT LPYSAYSNRN RSLLYRPAML SMVAIAAVCV CVGLFFHGPP  1020
EVLCVFPPFR WEMLGYGEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	119	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein