PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR94861.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family LBD
Protein Properties Length: 302aa    MW: 32885.3 Da    PI: 6.6088
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR94861.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-314107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e+
  RWR94861.1   4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAIFRSLLYEACGRVVNPIYGSVGLLWSGSWQLCQAAVEA 102
                 6*************************************************************************************************9 PP

      DUF260  95 allke 99 
                 +l+++
  RWR94861.1 103 VLRGA 107
                 98776 PP

Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINSGPEH  60
LRPAIFRSLL YEACGRVVNP IYGSVGLLWS GSWQLCQAAV EAVLRGAPIV QIPSEAATGS  120
CPPLKAYDIR HVSKEDNSAS QALHKVKTRS GFKRTAKPKK TKLDLAADLI DEPVKPVPEL  180
APVCNLRWRR CYPDGSERVM SHESSASQQS EPSAEEDSRE TESMFSVETV EASLFNLVDS  240
ERVGQPVGSD DGSELGLELT LGLEPVSHAS CFQISRHVVT GEDAEGSVGD TCKVELGLHL  300
RS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-86LBD family protein