PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94861.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 302aa MW: 32885.3 Da PI: 6.6088

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.5	1.6e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e+ RWR94861.1 4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAIFRSLLYEACGRVVNPIYGSVGLLWSGSWQLCQAAVEA 102 6*************************************************************************************************9 PP DUF260 95 allke 99 +l+++ RWR94861.1 103 VLRGA 107 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINSGPEH 60 LRPAIFRSLL YEACGRVVNP IYGSVGLLWS GSWQLCQAAV EAVLRGAPIV QIPSEAATGS 120 CPPLKAYDIR HVSKEDNSAS QALHKVKTRS GFKRTAKPKK TKLDLAADLI DEPVKPVPEL 180 APVCNLRWRR CYPDGSERVM SHESSASQQS EPSAEEDSRE TESMFSVETV EASLFNLVDS 240 ERVGQPVGSD DGSELGLELT LGLEPVSHAS CFQISRHVVT GEDAEGSVGD TCKVELGLHL 300 RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-86	LBD family protein