PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR94134.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 459aa MW: 49080 Da PI: 8.541 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 3.9e-10 | 41 | 65 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C ++++tG C yG+ C+F+H+ RWR94134.1 41 DVVDCAYYMQTGSCGYGAWCRFNHP 65 5789********************8 PP | |||||||
2 | zf-CCCH | 38.6 | 1.8e-12 | 87 | 111 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtC+yG+rCk+ H++ RWR94134.1 87 QPVCQYFLRTGTCNYGARCKYDHPR 111 689********************96 PP | |||||||
3 | zf-CCCH | 30.9 | 4.5e-10 | 132 | 157 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+C++G++Ck++H++ RWR94134.1 132 GEKECSYYVKTGQCRFGGTCKYHHPE 157 7899********************96 PP | |||||||
4 | zf-CCCH | 39 | 1.4e-12 | 284 | 310 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G++C+++H+p RWR94134.1 284 PGQPECQFYMRTGDCKFGSSCRYHHPP 310 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.3 | 8e-11 | 333 | 356 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C f+++ G+Ck+G++CkF H++ RWR94134.1 333 PACTFYSQHGYCKFGPTCKFDHPM 356 78********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence |
MDIYGRTLPS ASASPSAETG LEESMWELRL AGVAMYPVRP DVVDCAYYMQ TGSCGYGAWC 60 RFNHPCDRSV IAGAVGSREA YPERVGQPVC QYFLRTGTCN YGARCKYDHP RYGHLSASTV 120 SLNNHGFPLR PGEKECSYYV KTGQCRFGGT CKYHHPEPVS TSMSPTAPAF YPTVQSPSVP 180 SPSQAGVTSW QVARPPSVPA SYVPGPYNSL LLSPAVFPYP GWGPYSQPPV SPMVNIGTQQ 240 TVGTGWSSGL TQHLPSYTGP YSSVSSSAGP SSSRSKEHIF PERPGQPECQ FYMRTGDCKF 300 GSSCRYHHPP QWNRPNSNCA LNPMGLPLRP GAPACTFYSQ HGYCKFGPTC KFDHPMGTLS 360 YSPSASSLTD MPVAPYPVGL SLGVLAPSSG LELRREFVAG STRDSSSTRM PPSENTSRAL 420 VGSISSKSGV PGPQSHIQVT GQSSVPPSGS SGMGRGSQS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-134 | C3H family protein |