PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR94106.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 405aa MW: 46140.2 Da PI: 5.8359

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR94106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.2	7e-08	80	124	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 +++ C+ +e +++++fC + + +lC++C H g H+++pl RWR94106.1 80 RNHLCNACEANPASIFCSTHNLFLCQNCDWDVHDGlspaHDRRPL 124 6899*************************9999779999998875 PP
2	CCT	62.7	1.1e-21	350	392	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ llRYkeK+ktR+++K+irYesRKa+A+sR RvKGrF+k RWR94106.1 350 RDMVLLRYKEKKKTRRYDKHIRYESRKARADSRTRVKGRFAKV 392 666789***********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MPNSPPSKQT HLLQTPKNQS QQQEEKDEQT QQNHHHHHHL CDFCNKSIPL LYCRADTARL 60 CFSCDRSVHS DNPLFSKHQR NHLCNACEAN PASIFCSTHN LFLCQNCDWD VHDGLSPAHD 120 RRPLEGFSGC PSAIEFASAF GVDEKGLLGE EDGEDWVDRV LDGWVWETSA PVVSLDDLIV 180 PTTAVAGSCH GFQAVGVSPP LKHRNVGCGK YKEEILKQLR DLVKTETPND ECETLDAVHG 240 LQYLVPEQNI QPQNLSTENE NDAVPILVPC YEASAVQWHD NSHEATDPVS FSYKNFLENT 300 IEENSSVLDG YTNVHDSETH TNEDKKEIIS CFEEIPRLQP RVYELTGHDR DMVLLRYKEK 360 KKTRRYDKHI RYESRKARAD SRTRVKGRFA KVTNDQKVDS VERQV

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MPNSPPSKQT HLLQTPKNQS QQQEEKDEQT QQNHHHHHHL CDFCNKSIPL LYCRADTARL  60
CFSCDRSVHS DNPLFSKHQR NHLCNACEAN PASIFCSTHN LFLCQNCDWD VHDGLSPAHD  120
RRPLEGFSGC PSAIEFASAF GVDEKGLLGE EDGEDWVDRV LDGWVWETSA PVVSLDDLIV  180
PTTAVAGSCH GFQAVGVSPP LKHRNVGCGK YKEEILKQLR DLVKTETPND ECETLDAVHG  240
LQYLVPEQNI QPQNLSTENE NDAVPILVPC YEASAVQWHD NSHEATDPVS FSYKNFLENT  300
IEENSSVLDG YTNVHDSETH TNEDKKEIIS CFEEIPRLQP RVYELTGHDR DMVLLRYKEK  360
KKTRRYDKHI RYESRKARAD SRTRVKGRFA KVTNDQKVDS VERQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	6e-74	CO-like family protein