PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR93895.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 351aa    MW: 40030.2 Da    PI: 6.6466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR93895.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF725.3e-23953145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                kr en s rqvt+skR++gilKKA+ELS+LCd+++a+++fs+tgk
  RWR93895.1  9 KRLENISGRQVTYSKRKAGILKKAKELSILCDIDIALLMFSPTGK 53
                6899***************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MGRVKLKIKR LENISGRQVT YSKRKAGILK KAKELSILCD IDIALLMFSP TGKPTLCLGE  60
RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGTS AQTVEELSNH  120
SKLLQSQLSE IHKRLSYWSD PDKINDIDHI RAMEESLKES LSRIRSHKDD FGKQQLMPLE  180
CTGQFQNGIH LPLGMGDEQE AQPISWLHNG DSQQMMLSED PNLLPQRDME CCRGASLPSY  240
SGYFSTGKQA DIDRTAQEGV LNELNRNACL RLELGGQYPY QSYNLNLLNE KKFKTETEMN  300
LQDSHVVDYR INGFELPRPS YDTDHHHNWA STSGSCAITM FDEHSYAQQP N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-104M-type_MADS family protein