PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93884.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 300aa MW: 32623.9 Da PI: 7.3564

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100	2.2e-31	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e+ RWR93884.1 4 SCNGCRVLRKGCSDNCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINSGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEA 102 6*************************************************************************************************9 PP DUF260 95 allke 99 +l ++ RWR93884.1 103 VLKGA 107 98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MRMSCNGCRV LRKGCSDNCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINSGPEH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIM QISSEAATGP 120 PLKAYDIRHV SKDESSASQA LHKVKTRGRF KRSAKPKSKP DSAAGFAPES PNPIPEPSPV 180 CNLRWRRCYP DESARAASHD SSDASHQSEP NADGDSRETE SMFSVETVEA SIANRAESER 240 VAQPESRVED CELGLELTLG FEPVVLHASR VQAARHVLMP DQVGCNSDTC KVELGLDLTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	9e-86	LBD family protein