PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93648.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 822aa MW: 92191 Da PI: 6.3539

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	114.6	5.6e-36	128	204	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCead+ e+k yhrrh+vC +++a++v++ g++ r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k+ RWR93648.1 128 RCQVPGCEADIRELKGYHRRHRVCLRCANATTVMLGGQSMRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKS 204 6*************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence
MENPQAPPEV AEASLPTAWE WDSFLDFSID EPSILSWDSE EPAPAPEPAL EPGPGTISQS 60 QTSSSISDRV RKRDPRLTCE NFMAGRVPCA CPELDEKEEE EERQIGMKRP RRTPAAAGGR 120 ARAGASARCQ VPGCEADIRE LKGYHRRHRV CLRCANATTV MLGGQSMRYC QQCGKFHILS 180 DFDEGKRSCR RKLERHNNRR RRKSIDIRSA AEKETDGISS ADDVACNDEN GREMLNASTS 240 DDLCLTNQLK DTETVLESED GHGSAFCSVP GFQNIHTNSV ASFVTSGETQ TDEGKDYSKP 300 SLPSSFYNQK CSYSSVCPTG RMSFKLYDWN PAEFPRRLRH QIFQWLASMP IELEGYIRPG 360 CIILTSFIAM PRFMWVKLSE DALTYVNDLV NAPESLLSGR PTMRIYLNDM IFQVVKDGTS 420 LINIKVRARV PRLHYVHPAY FEAGKPMEFV VCGTNLFQPK FRLLVSFGGK YLACESCLAI 480 PQKNRSAHAV DSESTNSCDH EMFKIYIPGT DLNLFGPAFI EVENESGLSN FIPVLIGDRQ 540 ICTELEMIWQ RADKVLYSES PSTQFADTDG VPNSCQAFIS KQTAMSDLLL DIAWLLKEPQ 600 LDKNENGLTS TQVQRMNCLL RFLIQNQCVS VLERILQSLM NTMEAVQLYD GINKTNDADI 660 RSFQKYMAQA RKILDHKVQC PERSITESEN CPQMVYLQKS EIKSKMLYSL PSTNQGMDVR 720 MEDGLPSTEA SASQGSDIHV SLINKEVVMD VDNCPRLMKG MKWPQKACAQ VLPSSIKRSH 780 LVVLSMAAVA VCFGICAAVS YPHEVRRFAV TMRRCLFGSS MT

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence

MENPQAPPEV AEASLPTAWE WDSFLDFSID EPSILSWDSE EPAPAPEPAL EPGPGTISQS  60
QTSSSISDRV RKRDPRLTCE NFMAGRVPCA CPELDEKEEE EERQIGMKRP RRTPAAAGGR  120
ARAGASARCQ VPGCEADIRE LKGYHRRHRV CLRCANATTV MLGGQSMRYC QQCGKFHILS  180
DFDEGKRSCR RKLERHNNRR RRKSIDIRSA AEKETDGISS ADDVACNDEN GREMLNASTS  240
DDLCLTNQLK DTETVLESED GHGSAFCSVP GFQNIHTNSV ASFVTSGETQ TDEGKDYSKP  300
SLPSSFYNQK CSYSSVCPTG RMSFKLYDWN PAEFPRRLRH QIFQWLASMP IELEGYIRPG  360
CIILTSFIAM PRFMWVKLSE DALTYVNDLV NAPESLLSGR PTMRIYLNDM IFQVVKDGTS  420
LINIKVRARV PRLHYVHPAY FEAGKPMEFV VCGTNLFQPK FRLLVSFGGK YLACESCLAI  480
PQKNRSAHAV DSESTNSCDH EMFKIYIPGT DLNLFGPAFI EVENESGLSN FIPVLIGDRQ  540
ICTELEMIWQ RADKVLYSES PSTQFADTDG VPNSCQAFIS KQTAMSDLLL DIAWLLKEPQ  600
LDKNENGLTS TQVQRMNCLL RFLIQNQCVS VLERILQSLM NTMEAVQLYD GINKTNDADI  660
RSFQKYMAQA RKILDHKVQC PERSITESEN CPQMVYLQKS EIKSKMLYSL PSTNQGMDVR  720
MEDGLPSTEA SASQGSDIHV SLINKEVVMD VDNCPRLMKG MKWPQKACAQ VLPSSIKRSH  780
LVVLSMAAVA VCFGICAAVS YPHEVRRFAV TMRRCLFGSS MT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	202	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	SBP family protein