PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93464.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 466aa MW: 52685.5 Da PI: 8.1599

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.6e-07	7	30	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G+C++ +C+FaHg RWR93464.1 7 YKTKLCILYQR-GHCPR-QSCSFAHG 30 9********.*.*****9 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MMERKLYKTK LCILYQRGHC PRQSCSFAHG DAELRRFSGS FNGRRDHRGS DLRERLDRRH 60 SPQRRYSPGR DTRGRHAFRG QKLSSYERGN SRSRSPGKRS ERRHQRKQHL NGQSDVSGSL 120 KNSDGADDHI KEGKVSSYDE KDVLEEQLKQ AQLDIDMLDD HKSQLEVALE EKVQEADGLA 180 TRIRELETQL SKEEEDCKRV LSKIKKFIKA HNRHVRAQEE LKKTQIRLQR LGDQLCSDMP 240 RLGAAEEDSS INIVSDGETN GDYQMSPRNE LKNQMSPSKK RMRASHGISE ETKPASSKNR 300 EGLLVRTNKL EKLARWEGSL QRDSNRKESD AQSKTIVGNN VHRPLANENK HKRGKNDSSG 360 VSSFDKVKGS DTGYLLPPTS MAAHAIDDLI EAMDQEEKLE TGNAATIPTN GRTDDKAGLP 420 CLPPPPLVLQ NAYYQYEGED EDVDVGDLAV DIGDADINSE VEIVHV

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MMERKLYKTK LCILYQRGHC PRQSCSFAHG DAELRRFSGS FNGRRDHRGS DLRERLDRRH  60
SPQRRYSPGR DTRGRHAFRG QKLSSYERGN SRSRSPGKRS ERRHQRKQHL NGQSDVSGSL  120
KNSDGADDHI KEGKVSSYDE KDVLEEQLKQ AQLDIDMLDD HKSQLEVALE EKVQEADGLA  180
TRIRELETQL SKEEEDCKRV LSKIKKFIKA HNRHVRAQEE LKKTQIRLQR LGDQLCSDMP  240
RLGAAEEDSS INIVSDGETN GDYQMSPRNE LKNQMSPSKK RMRASHGISE ETKPASSKNR  300
EGLLVRTNKL EKLARWEGSL QRDSNRKESD AQSKTIVGNN VHRPLANENK HKRGKNDSSG  360
VSSFDKVKGS DTGYLLPPTS MAAHAIDDLI EAMDQEEKLE TGNAATIPTN GRTDDKAGLP  420
CLPPPPLVLQ NAYYQYEGED EDVDVGDLAV DIGDADINSE VEIVHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	4e-59	C3H family protein