PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR93423.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 749aa    MW: 81803.1 Da    PI: 6.0739
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR93423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2090145156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  RWR93423.1  90 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 145
                 688999***********************************************999 PP
2START221.62.6e-692885081206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++ +++ep+W        e++ +de++++f+++ +      ++ea+r+++vv+m++ +lve+l+d + qW+  +     +a+t+ev+s
  RWR93423.1 288 ELAVAAMEELIRMSQLGEPLWLPGLdgstEILSEDEYVRSFPRGIGpkpfgLKSEASRETAVVIMNHINLVEILMDAN-QWSSVFSgivsRAMTMEVLS 385
                 57899*****************9999999**************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+++fvRy++q+++g+w++vdvS+d+ ++ p    v R++++pSg+li++++ng+skvtwvehv++++r +h
  RWR93423.1 386 TGvagnynGALQVMSAEFQVPSPLVPtRESYFVRYCKQHPDGTWAVVDVSLDHLRPIP----VLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRAVH 480
                 ********************************************************99....7************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++++lv+sgla+gak+wvatl+rqce+
  RWR93423.1 481 SIYKPLVNSGLAFGAKRWVATLDRQCER 508
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    
MPAGIMIPAR QMPPMVEKAV AGFGSSGLTL GQVMFQPNKL EGQQHHLEMS HTLESEMAKI  60
REEDFESKSG SENIEGASGE DQDPNQRPRK KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK  120
ELSRELGLEP LQVKFWFQNK RTQMKTQHER HENTQLRTEN EKLRTENMRY KEALSNASCP  180
NCGGPTALGE MSFDEHHLRV ENARLREEID RISGIAAKYV GKPMVPYPLV PPTVPSRSPL  240
DLGVGNFGMQ QSLGGELYGA GDLLRSVSGS VPGSVPGHSD IDKPMVIELA VAAMEELIRM  300
SQLGEPLWLP GLDGSTEILS EDEYVRSFPR GIGPKPFGLK SEASRETAVV IMNHINLVEI  360
LMDANQWSSV FSGIVSRAMT MEVLSTGVAG NYNGALQVMS AEFQVPSPLV PTRESYFVRY  420
CKQHPDGTWA VVDVSLDHLR PIPVLRCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRAVH  480
SIYKPLVNSG LAFGAKRWVA TLDRQCERLA SVMASNIPAG DVGVITSQEG RKSMLKLAER  540
MVISFCAGVS ASTAHTWTTL SGSGAEDVRV MTRKSIDDPG RPPGIVLSAA TSFWLPWDIL  600
SNGGIVQEMA HIANGHDPGN CVSLLRVNST NSNQSNMLIL QESCTDPTGS FVIYAPVDII  660
AMNMVLNGGD PDYVALLPSG FAILPDGSSM HVGGVDEVGS GGSLLTVAFQ ILVDSTPTAK  720
LSLGSVATVN NLISCTVQRI KAAVSCDNA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein