PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93333.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 720aa MW: 80892.3 Da PI: 6.2849

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.5	1.4e-24	134	234	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++ +++a+e+ + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF+ + +++el+v RWR93333.1 134 FCKILTASDTSTHGGFSVLRRHANEClppldMTQPTPTQELVAKDLHGLEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFM--RGENGELRV 230 99**************************9666677789********************************************..449999* PP EEE- CS B3 95 kvfr 98 +v+r RWR93333.1 231 GVRR 234 **98 PP
2	Auxin_resp	98.9	7.1e-33	260	339	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+ s+F++ ++k+++a+++ +s+GmRfkm+fe+ed +err++Gt+vgv d+++ +W S WrsLk RWR93333.1 260 ASHAVTTNTLFTVYYKPRT--SQFIIGLNKYLEAVENGFSLGMRFKMRFEGEDTPERRFTGTIVGVGDVSS-KWACSDWRSLK 339 689*************6..9******************************************888.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MAYGDSYRGS SNSSSERTEA GGVGYEEKLY EELWRGCAGP LVDVPRRGER VFYFPQGHME 60 QLEASTNQES DQQIHLFNLP SKILCQVINI QLRAEPDTDE VYAQITLQPD PEQTLPKIPD 120 QSLSEPQRPT VHSFCKILTA SDTSTHGGFS VLRRHANECL PPLDMTQPTP TQELVAKDLH 180 GLEWRFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF MRGENGELRV GVRRFTQQQS 240 TMPSSVISQQ SMHLGILATA SHAVTTNTLF TVYYKPRTSQ FIIGLNKYLE AVENGFSLGM 300 RFKMRFEGED TPERRFTGTI VGVGDVSSKW ACSDWRSLKV QWDEAAVLQR PESVSSWEIE 360 PFDVSVSLSE TYPAPMKTKR IRPSIELPIS EPSSGFWYPG TTQSRDLSAL SNSDAQSCET 420 QVVWSPKQKE IKENILNRGR IHNMGRHEDV WLKDLLVSFP NQPECPSSLT DVSLKLFQDE 480 NEESKVVSVL PVAPGNLTSN HILKPGNESM SILTDRGKIS EARNGYRLFG IDLIDSSNNS 540 HATEKTSMTG LFNISDSAMV AAPTQATVYA ADSDQLPGLP KASKEQKLSL QTSPKEVQSR 600 QTCSTTRSRT KVQLQGSAVG RAVDLTMLGG YDELVMELER MFEIHGELRH RKKWQIAFTD 660 DENDMMLVGD DPWPEFCRMV KKIFIYTCEE VKKMNSRIKL HSPANVSGVL SMDSELKSET

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MAYGDSYRGS SNSSSERTEA GGVGYEEKLY EELWRGCAGP LVDVPRRGER VFYFPQGHME  60
QLEASTNQES DQQIHLFNLP SKILCQVINI QLRAEPDTDE VYAQITLQPD PEQTLPKIPD  120
QSLSEPQRPT VHSFCKILTA SDTSTHGGFS VLRRHANECL PPLDMTQPTP TQELVAKDLH  180
GLEWRFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF MRGENGELRV GVRRFTQQQS  240
TMPSSVISQQ SMHLGILATA SHAVTTNTLF TVYYKPRTSQ FIIGLNKYLE AVENGFSLGM  300
RFKMRFEGED TPERRFTGTI VGVGDVSSKW ACSDWRSLKV QWDEAAVLQR PESVSSWEIE  360
PFDVSVSLSE TYPAPMKTKR IRPSIELPIS EPSSGFWYPG TTQSRDLSAL SNSDAQSCET  420
QVVWSPKQKE IKENILNRGR IHNMGRHEDV WLKDLLVSFP NQPECPSSLT DVSLKLFQDE  480
NEESKVVSVL PVAPGNLTSN HILKPGNESM SILTDRGKIS EARNGYRLFG IDLIDSSNNS  540
HATEKTSMTG LFNISDSAMV AAPTQATVYA ADSDQLPGLP KASKEQKLSL QTSPKEVQSR  600
QTCSTTRSRT KVQLQGSAVG RAVDLTMLGG YDELVMELER MFEIHGELRH RKKWQIAFTD  660
DENDMMLVGD DPWPEFCRMV KKIFIYTCEE VKKMNSRIKL HSPANVSGVL SMDSELKSET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein