PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR93306.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 643aa MW: 71558.6 Da PI: 6.7236

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR93306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	459	505	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq RWR93306.1 459 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 505 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MRMEMGMGRF WSEEDKAMAV AVMGSDAFNY LWTSRASAES LFAAAGGVDD GNLQNKLSEI 60 VEGSNSLNLG WNYAIFWQVS QTKSGELVLG WGDGYCREPE EGEESETRVL SFGEKDCIQQ 120 KMRKGVLQKL HTFFGGSEEE SYAFGLDRVS GTEMYYLSSM YFSFPRGVGA PGKSFRSGEP 180 VWLSGMLNSP SDFCIRSFLA RLAGIQTAVL VPTETGVIEL GSVRPIPKNV RVLQMIKSMF 240 SISAFPLIKV NGMVPVSVVS ENKEGHVPTS SFRFSGEHEE ELPKIFGHNL STGVSQIGEK 300 LVVPKVEEKP WHVHSNGSRM PFMHTSKGFQ GLNWNPARCV KPGVELNTSQ SLLNPAQKFN 360 NNITMVSKGI DSAHQACLPS NGFKEDTWCN QFQPQQQQQR QIDFTRTPRG STTTHLSTVE 420 SEHSDVEASG KEDQSGQADE HKPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA 480 VVPNISKMDK ASLLGDAIAY ITELQKKLKE MESERDTFGT TSRDASSEAT SVENQKRSQS 540 PGIDIQAVHD EVIVRVTSPL DTHPVSKIIR TLKEAHVDVI DSKIAAANDT VFHTFVLKSQ 600 GPEELNKEKL IAAVSRESSF FGNYYLCDIL RGDSCNTWPF NKS

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MRMEMGMGRF WSEEDKAMAV AVMGSDAFNY LWTSRASAES LFAAAGGVDD GNLQNKLSEI  60
VEGSNSLNLG WNYAIFWQVS QTKSGELVLG WGDGYCREPE EGEESETRVL SFGEKDCIQQ  120
KMRKGVLQKL HTFFGGSEEE SYAFGLDRVS GTEMYYLSSM YFSFPRGVGA PGKSFRSGEP  180
VWLSGMLNSP SDFCIRSFLA RLAGIQTAVL VPTETGVIEL GSVRPIPKNV RVLQMIKSMF  240
SISAFPLIKV NGMVPVSVVS ENKEGHVPTS SFRFSGEHEE ELPKIFGHNL STGVSQIGEK  300
LVVPKVEEKP WHVHSNGSRM PFMHTSKGFQ GLNWNPARCV KPGVELNTSQ SLLNPAQKFN  360
NNITMVSKGI DSAHQACLPS NGFKEDTWCN QFQPQQQQQR QIDFTRTPRG STTTHLSTVE  420
SEHSDVEASG KEDQSGQADE HKPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA  480
VVPNISKMDK ASLLGDAIAY ITELQKKLKE MESERDTFGT TSRDASSEAT SVENQKRSQS  540
PGIDIQAVHD EVIVRVTSPL DTHPVSKIIR TLKEAHVDVI DSKIAAANDT VFHTFVLKSQ  600
GPEELNKEKL IAAVSRESSF FGNYYLCDIL RGDSCNTWPF NKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-154	bHLH family protein