PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR93265.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 355aa    MW: 39674.6 Da    PI: 6.827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR93265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.7e-12210235126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C +Gd+CkF+H+
  RWR93265.1 210 YQPDICKDYKETGYCGFGDSCKFMHD 235
                 66789********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MADSNEPQTG EEVCNFFRKP SNKNKNIRKR TVDTTDADAE AEAEEDPSQN PTSSIHHKRK  60
KPPKPTTNLH FSSTTTSSKN RPSQFEPNPS AGDGDDDDQP PSATAVFHFE SSSLIQVHND  120
SRATATLETE TDFNRDARAI RERVLKQADE SLKGKGKGRA DEKVYRGMNA YTDYKAGFRR  180
EQTVAGEKAG GAHGPLRASA HIRSSMRFDY QPDICKDYKE TGYCGFGDSC KFMHDRGDYK  240
SGWQMEREWD EAEKVRKRNL ALGGGEDGDG AAERGGGGGG RDADDDDDED SLPFACFICR  300
QPFQDPVVTK CKHYFCEHCA LKHHSRNKKC YVCNKPTLGI FNTAHEIKKK MAEEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-141C3H family protein