PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR92674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25668.3 Da PI: 9.764 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.9 | 4.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELS+LCdae+a+i+fss+g+lyeys+ RWR92674.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEIALIVFSSRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 118.8 | 4.7e-39 | 76 | 173 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ss+++ +ea+a+++qqe+akL+++i+ Lq+++Rhl+G+ L+sLs+keL+qLe++Le++l++iRskK+ell+++ie++qk+e elq++n++Lr+k++e RWR92674.1 76 SSNTNvSTEANAQYYQQEAAKLRQQIQILQNSIRHLMGDALSSLSIKELKQLENRLERGLTRIRSKKHELLFAEIEYMQKREVELQNNNMYLRAKIAE 173 445555899**************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCD AEIALIVFSS RGRLYEYSNN 60 NIKATIERYK KACTNSSNTN VSTEANAQYY QQEAAKLRQQ IQILQNSIRH LMGDALSSLS 120 IKELKQLENR LERGLTRIRS KKHELLFAEI EYMQKREVEL QNNNMYLRAK IAEVEQAQQT 180 HLLPAPEFGA LPAFDSRNFF GGVNILEEAS HYSKQDQTAL HLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 2e-99 | MIKC_MADS family protein |