PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92422.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 523aa MW: 57680.1 Da PI: 5.787

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.9e-06	324	345	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H r H RWR92422.1 324 FCEICGKGFKRDANLRMHKRAH 345 6*******************98 PP
2	zf-C2H2	12.4	0.00046	409	432	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs s+Lk+H++ + RWR92422.1 409 YSCNRCNkKSFSVVSDLKSHLKHC 432 99*******************977 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MLPSDHLSPN RSMAYATGEN PSSLRPQLRQ IEIPLASSDP RVPLFNLSIL DRKIDSVRRF 60 LSELLQRNAS IRDEQIDLVS KEIGSSIHQI ILNGAALLGS SQCQNLGSDV GGLTGSIAGN 120 ASDLMDLRGS TVSSFDVEVN DPIKARASKP SDLCDLTGTS ADLEFLRNPE QLRIPSAEVK 180 IASDLKFSFG SDSRNLRVPA DQGIPAMRDG NLVDLKVLEK AAGSTNLGIR RDGNLFDLEL 240 EEMSTMSGNM VDLKLPFFSD SRNLKIPGDQ GIPAAGDRNL VDLKLPEEST AFRNGGKDVE 300 DGDDADAEII ELDSVELLAE HMHFCEICGK GFKRDANLRM HKRAHGNQFK TIEALSKPDR 360 SDEDRARKIR FSCPFTGCNR NKSHKRFRPL KSAVCVKNHF KRSHCPKMYS CNRCNKKSFS 420 VVSDLKSHLK HCGECRWRCS CGTSFSRKDK LFGHVALFEG HMPAIVGEDQ SKGMDLEEEM 480 QVDREEHVET ADAEASDFGF FEGLLEGFSG IDAGSLDDLL GFL

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MLPSDHLSPN RSMAYATGEN PSSLRPQLRQ IEIPLASSDP RVPLFNLSIL DRKIDSVRRF  60
LSELLQRNAS IRDEQIDLVS KEIGSSIHQI ILNGAALLGS SQCQNLGSDV GGLTGSIAGN  120
ASDLMDLRGS TVSSFDVEVN DPIKARASKP SDLCDLTGTS ADLEFLRNPE QLRIPSAEVK  180
IASDLKFSFG SDSRNLRVPA DQGIPAMRDG NLVDLKVLEK AAGSTNLGIR RDGNLFDLEL  240
EEMSTMSGNM VDLKLPFFSD SRNLKIPGDQ GIPAAGDRNL VDLKLPEEST AFRNGGKDVE  300
DGDDADAEII ELDSVELLAE HMHFCEICGK GFKRDANLRM HKRAHGNQFK TIEALSKPDR  360
SDEDRARKIR FSCPFTGCNR NKSHKRFRPL KSAVCVKNHF KRSHCPKMYS CNRCNKKSFS  420
VVSDLKSHLK HCGECRWRCS CGTSFSRKDK LFGHVALFEG HMPAIVGEDQ SKGMDLEEEM  480
QVDREEHVET ADAEASDFGF FEGLLEGFSG IDAGSLDDLL GFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	5e-71	C2H2 family protein