PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92352.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 623aa MW: 69800 Da PI: 5.8934

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.3e-10	362	403	8	54
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++N+++ Lr+l+Pk + K++ a+iL A+e +k+L RWR92352.1 362 AERKRRKKLNDRLYLLRSLVPKiS------KMDRASILGDAIELVKEL 403 7*******************66......************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MMNALQTSIE RLRPLVGMKG WDYCVLWKLR EDQKCIDWMG CCCGGAESAP KEEEHMFPVS 60 PIVPCRDVMF QHPRTKACDL LAELPSSMPL DSGIHTQALI SSHPKWINLP NISDSIISDV 120 EAVGTRVFIP VPGGLVELFV AKKVPEEQHI TEFVMAQCNP SWEQEAMLVR NGSADTGFDG 180 PCLNHGFTGD DPINHPPEPF PSNGYETKSN TNHFQPWITP TNDNSSLPWD LSTDQIRLCN 240 SPMNFFSGTS LPPTDDRPKN DIFLEGSLDS IHKPPSFNSA MDDGFPDMSA MQRSIGMATP 300 NLHPSLAESS VTKELGHDKD SIKQEMGRGN SISDCSDQME DDDGHKAAGR SGRKNASKNL 360 YAERKRRKKL NDRLYLLRSL VPKISKMDRA SILGDAIELV KELLKQVKDL EDELEETPED 420 EERKDNCNNH DNVQSEVPNQ NVAGHGDGES PKRLKTADQG TRCSSSDKTG DLVKQSHDSM 480 STEDKAHQME AQVEVSQVSA NEFFLKVFWE PKRGGFVRLM EAINSLGLEV TNANVTTFRT 540 LVLNVFKVKK RDNEVVQADQ VRDSLLELTR NPNGGWPESG RVGENGGSDY LLHQHHHQHQ 600 HHQHRLNSQH NPHHDLHHLH HQS

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MMNALQTSIE RLRPLVGMKG WDYCVLWKLR EDQKCIDWMG CCCGGAESAP KEEEHMFPVS  60
PIVPCRDVMF QHPRTKACDL LAELPSSMPL DSGIHTQALI SSHPKWINLP NISDSIISDV  120
EAVGTRVFIP VPGGLVELFV AKKVPEEQHI TEFVMAQCNP SWEQEAMLVR NGSADTGFDG  180
PCLNHGFTGD DPINHPPEPF PSNGYETKSN TNHFQPWITP TNDNSSLPWD LSTDQIRLCN  240
SPMNFFSGTS LPPTDDRPKN DIFLEGSLDS IHKPPSFNSA MDDGFPDMSA MQRSIGMATP  300
NLHPSLAESS VTKELGHDKD SIKQEMGRGN SISDCSDQME DDDGHKAAGR SGRKNASKNL  360
YAERKRRKKL NDRLYLLRSL VPKISKMDRA SILGDAIELV KELLKQVKDL EDELEETPED  420
EERKDNCNNH DNVQSEVPNQ NVAGHGDGES PKRLKTADQG TRCSSSDKTG DLVKQSHDSM  480
STEDKAHQME AQVEVSQVSA NEFFLKVFWE PKRGGFVRLM EAINSLGLEV TNANVTTFRT  540
LVLNVFKVKK RDNEVVQADQ VRDSLLELTR NPNGGWPESG RVGENGGSDY LLHQHHHQHQ  600
HHQHRLNSQH NPHHDLHHLH HQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	363	370	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-120	bHLH family protein