PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR92230.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

FAR1

Protein Properties

Length: 559aa MW: 64788.2 Da PI: 8.1628

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR92230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.7	9.1e-19	37	123	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Yn+Y+k +GFs+rk++s++ ++ge+++++fv skegk++e++ +e +r+r+e r +Ckakl+vk++k+g ++v+ ++ +H+H+ RWR92230.1 37 LYNAYGKLAGFSIRKESSNRG-KDGEVVWKRFVYSKEGKTDEKHWIgKELVQRRRMEIRFDCKAKLQVKLDKSGGYVVSMFVPQHSHA 123 7**************9998.8899**********999876567788999******************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MDMTTSSSSI VHYPVVDENM TPRLGMHFDY LDEAYNLYNA YGKLAGFSIR KESSNRGKDG 60 EVVWKRFVYS KEGKTDEKHW IGKELVQRRR MEIRFDCKAK LQVKLDKSGG YVVSMFVPQH 120 SHAPATPSCN HHGQITLFGC GFLPNEKMES FEWLFNTWLE AMSYSPPKGI ITDQDLAMTK 180 AIKNVMPNTD HRFWNQIIAD NKLMENDWLA DIFKIRHMWV PAYLKKNFFG GMSTTQRSES 240 MNSFAKQYVE YKNSLLDFIL PFDTRVERLR YLEKKEDFEN SNGRPKMKTC SLMEKQMAEV 300 YTRNIFYKFQ DELFTTMSVA ENIVYKDDVD CKFVVKNYSD EKEIEREVLW KKDEKHAYCS 360 YKKFEFEDIP CCHVLSILRR GAILFLPERY ILKRWTKGVT RDAFLDVVES GGPEGVDPCL 420 ARHSHLSCKF ARLIDIASQS KECFEFLISD HGELEMKLRQ MMLNNPLNSS IDKGKAVVDS 480 NVVEYDEPAH VVTKGRSKRL KSSKEKATKG CLCKGCNKRG VSHDKRICPV LLNRLVDANP 540 SQSLASIDES RESSNEEMQ

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MDMTTSSSSI VHYPVVDENM TPRLGMHFDY LDEAYNLYNA YGKLAGFSIR KESSNRGKDG  60
EVVWKRFVYS KEGKTDEKHW IGKELVQRRR MEIRFDCKAK LQVKLDKSGG YVVSMFVPQH  120
SHAPATPSCN HHGQITLFGC GFLPNEKMES FEWLFNTWLE AMSYSPPKGI ITDQDLAMTK  180
AIKNVMPNTD HRFWNQIIAD NKLMENDWLA DIFKIRHMWV PAYLKKNFFG GMSTTQRSES  240
MNSFAKQYVE YKNSLLDFIL PFDTRVERLR YLEKKEDFEN SNGRPKMKTC SLMEKQMAEV  300
YTRNIFYKFQ DELFTTMSVA ENIVYKDDVD CKFVVKNYSD EKEIEREVLW KKDEKHAYCS  360
YKKFEFEDIP CCHVLSILRR GAILFLPERY ILKRWTKGVT RDAFLDVVES GGPEGVDPCL  420
ARHSHLSCKF ARLIDIASQS KECFEFLISD HGELEMKLRQ MMLNNPLNSS IDKGKAVVDS  480
NVVEYDEPAH VVTKGRSKRL KSSKEKATKG CLCKGCNKRG VSHDKRICPV LLNRLVDANP  540
SQSLASIDES RESSNEEMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-55	FAR1 family protein