PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91501.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HB-PHD

Protein Properties

Length: 739aa MW: 83736.9 Da PI: 10.2574

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.5	1.4e-10	501	546	8	53
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n ps++ +e L+k+lg+ ++V+ WF+N R+ RWR91501.1 501 PPNAVEKLRRAFAENELPSRAFKENLSKQLGIASEKVSKWFKNARY 546 578899**************************************97 PP
2	PHD	34.4	5.1e-12	236	291	1	51
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ d+ +++++lCd +C+ +fH+kCl+++l +e++p g w+C+ C++k RWR91501.1 236 FCAKCKLRDAfpDNDIILCDgTCNCAFHQKCLEPPLATENIPPGdqGWICKFCECK 291 699999944455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence
MQSTGKSSLH RTSRRSSFSK RDIGSTINLS LQDKNGCKMS HTKRCKLKPR SGKTIGALLS 60 KRRASEFSCN GNKNNSSNRK QVRRALLKVS NDSSSKQQSS VRFPGRKSSP LNHKTNGRNA 120 NGDGRFHRIR KRRKLKKKEN SKQDEASRLK GRTRYLLIKM KLEQNLIDAY SGEGWKGQSR 180 EKIKPEKELQ RAKKQIMKCK LGIRDAIHQL DLLSSEGRIG DAVISPDGSV FHEHIFCAKC 240 KLRDAFPDND IILCDGTCNC AFHQKCLEPP LATENIPPGD QGWICKFCEC KMEILELINA 300 HLGTRFSLNS NWQDVFKEEA TAPDDGNISL DPAEEWPSDD SKDDDYDPET NEKTCSRSGI 360 AESMSDDACS SSGLFWSSDE ASSLSGSRRY DKVKVAGSPI NIYSDDTNNL EVTSHRRQRR 420 DVDYKKLHDE MFGKDAPESE LSEDDDWGPG RRKRRRKESD PGTNMATCDG KDGCLKGELT 480 MVVEKKLPSI SQDKKRLFRI PPNAVEKLRR AFAENELPSR AFKENLSKQL GIASEKVSKW 540 FKNARYMALK IRKEEKAKQP CSKDMIKGSN AEIGTNRNAD QAAAKTDPNL VASEAGVHIS 600 KNTKRLCRRK KPKSITLPLK NRGKRSAGSL PTNNIEVSMW LNNRMRRKRL SSLKCRKTSE 660 KMTSDPKTKS TNHINESRDK EQLYLVELER LFHLEDKVEK LKRVLEACRN DNHASSNETN 720 RGEQLVIYVP VAEVREKVT

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence

MQSTGKSSLH RTSRRSSFSK RDIGSTINLS LQDKNGCKMS HTKRCKLKPR SGKTIGALLS  60
KRRASEFSCN GNKNNSSNRK QVRRALLKVS NDSSSKQQSS VRFPGRKSSP LNHKTNGRNA  120
NGDGRFHRIR KRRKLKKKEN SKQDEASRLK GRTRYLLIKM KLEQNLIDAY SGEGWKGQSR  180
EKIKPEKELQ RAKKQIMKCK LGIRDAIHQL DLLSSEGRIG DAVISPDGSV FHEHIFCAKC  240
KLRDAFPDND IILCDGTCNC AFHQKCLEPP LATENIPPGD QGWICKFCEC KMEILELINA  300
HLGTRFSLNS NWQDVFKEEA TAPDDGNISL DPAEEWPSDD SKDDDYDPET NEKTCSRSGI  360
AESMSDDACS SSGLFWSSDE ASSLSGSRRY DKVKVAGSPI NIYSDDTNNL EVTSHRRQRR  420
DVDYKKLHDE MFGKDAPESE LSEDDDWGPG RRKRRRKESD PGTNMATCDG KDGCLKGELT  480
MVVEKKLPSI SQDKKRLFRI PPNAVEKLRR AFAENELPSR AFKENLSKQL GIASEKVSKW  540
FKNARYMALK IRKEEKAKQP CSKDMIKGSN AEIGTNRNAD QAAAKTDPNL VASEAGVHIS  600
KNTKRLCRRK KPKSITLPLK NRGKRSAGSL PTNNIEVSMW LNNRMRRKRL SSLKCRKTSE  660
KMTSDPKTKS TNHINESRDK EQLYLVELER LFHLEDKVEK LKRVLEACRN DNHASSNETN  720
RGEQLVIYVP VAEVREKVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	161	KRRKLKKKENSKQDEASRLKGRTRYLLIKMK
2	451	457	RRKRRRK
3	451	458	RRKRRRKE
4	452	456	RKRRR
5	452	458	RKRRRKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-137	HB-PHD family protein