PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR91375.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 397aa MW: 43603.5 Da PI: 5.6801

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR91375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.6	5.3e-08	23	63	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 r C+ ++ +qlfC+ ++ +lC C ++ H g H+ RWR91375.1 23 RACDSCKTASAQLFCRADSAFLCMGCDSKVH-GanklasrHE 63 78*****************************.4466676776 PP
2	zf-B_box	24.8	4.5e-08	65	107	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC +C + +H+ H++ RWR91375.1 65 VWMCEVCEQAPASVTCRADAAALCVTCDSDIHSAnplsrrHER 107 689*****************************65777777775 PP
3	CCT	69.6	8.1e-24	326	369	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ RWR91375.1 326 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 369 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MMRASEQEER SGAFPSGWAI SARACDSCKT ASAQLFCRAD SAFLCMGCDS KVHGANKLAS 60 RHERVWMCEV CEQAPASVTC RADAAALCVT CDSDIHSANP LSRRHERFPV VPFFDSPSVK 120 PNAVSLLVPD GLLKPSDDDE DDENALQHNN HHHHHHRRNG HNGEDEEEEE EEEEAEAASW 180 LLCTTNPKLM DGPDLKSGDY FFSDVDPYLD LDYGIDARFH LQHHQSSATA DSVVPVQTKP 240 LPSPPILHPT SENCIDFDFC RPKPSFSYSH SVSSSSLDVG VVPDGNMSGD VTNPFGSGMK 300 SGIGGMDLGS GGIPAAAATQ LSGLDREARV LRYREKRKNR KFEKTIRYAS RKAYAETRPR 360 IKGRFAKRTE IEAEVDRIYS AAPLMAETAG YGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MMRASEQEER SGAFPSGWAI SARACDSCKT ASAQLFCRAD SAFLCMGCDS KVHGANKLAS  60
RHERVWMCEV CEQAPASVTC RADAAALCVT CDSDIHSANP LSRRHERFPV VPFFDSPSVK  120
PNAVSLLVPD GLLKPSDDDE DDENALQHNN HHHHHHRRNG HNGEDEEEEE EEEEAEAASW  180
LLCTTNPKLM DGPDLKSGDY FFSDVDPYLD LDYGIDARFH LQHHQSSATA DSVVPVQTKP  240
LPSPPILHPT SENCIDFDFC RPKPSFSYSH SVSSSSLDVG VVPDGNMSGD VTNPFGSGMK  300
SGIGGMDLGS GGIPAAAATQ LSGLDREARV LRYREKRKNR KFEKTIRYAS RKAYAETRPR  360
IKGRFAKRTE IEAEVDRIYS AAPLMAETAG YGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	2e-94	CO-like family protein