PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90489.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 750aa MW: 84021.5 Da PI: 5.6678

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90489.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.4e-06	119	140	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C +f++ G C GdrC+F+Hg RWR90489.1 119 VPCFYFQK-GLCLKGDRCPFMHG 140 57778888.*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MESGHRDPNP VAVVSAEEEA IKRNTDCVYF LASPLTCKKG NDCEYRHSEG ARMNPRDCWY 60 WLNGNCLNLK CAFRHPPLEG LLGTTGAGAG SLVPTQTAAS MQMPAAQPTT GYNANKQSVP 120 CFYFQKGLCL KGDRCPFMHG SQPIVNPAPQ QTSNVTASVT EFPRTFKKAT GVLEKCSSQQ 180 KIPQINVMKS VEVPPTTNHV VKAEIAPNNE IAAKKTVPST PLYDELPRSK QSNVTQTVGN 240 AASRPRGHQM QLPEEHLQNG REAGEFLRES SPGFDVLVDD EHENPDYFLH EDEYGRATGN 300 GGRHLNTLNE FDYDHASERE CLAKFDREPY SDFRDYEQYG RTLDQYGWEH HKATSERILE 360 RPSMMERRRL REESPDQIDR LDLRHRLLKQ RKINGPRSAT SPDRRSELSL RDNQYGVEQR 420 YRGRPQRDQR HFPPESSISN RLQGRIMLPG RSSPDKVNDL RSDREIDRGK NWGRSSPSRP 480 LSYHQGRHHD RIRRPQENFT TEVRNFRGQP IKRDEIGTVN FAGPRRLAEL KGAKVSDSSE 540 ERSTKSNSGT ASKSQPLGEP KTMKSGKVVG QLEGSLSFEG PKPLSEILKR KREGASGNGS 600 ISSDGEDSGR RERVHQIGSS RIAVMDTPTV PGFDSKKVAG FNADVVDTVE ENDNNDEDGP 660 VTTDHSELVH DDPTSAAKGD ALETDDGLVV DTMGDQELEA YVQRDGESDY EMVEGGDFKP 720 EGENQEPEEE YLDDDEDGDD FSRRIGAMFS

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MESGHRDPNP VAVVSAEEEA IKRNTDCVYF LASPLTCKKG NDCEYRHSEG ARMNPRDCWY  60
WLNGNCLNLK CAFRHPPLEG LLGTTGAGAG SLVPTQTAAS MQMPAAQPTT GYNANKQSVP  120
CFYFQKGLCL KGDRCPFMHG SQPIVNPAPQ QTSNVTASVT EFPRTFKKAT GVLEKCSSQQ  180
KIPQINVMKS VEVPPTTNHV VKAEIAPNNE IAAKKTVPST PLYDELPRSK QSNVTQTVGN  240
AASRPRGHQM QLPEEHLQNG REAGEFLRES SPGFDVLVDD EHENPDYFLH EDEYGRATGN  300
GGRHLNTLNE FDYDHASERE CLAKFDREPY SDFRDYEQYG RTLDQYGWEH HKATSERILE  360
RPSMMERRRL REESPDQIDR LDLRHRLLKQ RKINGPRSAT SPDRRSELSL RDNQYGVEQR  420
YRGRPQRDQR HFPPESSISN RLQGRIMLPG RSSPDKVNDL RSDREIDRGK NWGRSSPSRP  480
LSYHQGRHHD RIRRPQENFT TEVRNFRGQP IKRDEIGTVN FAGPRRLAEL KGAKVSDSSE  540
ERSTKSNSGT ASKSQPLGEP KTMKSGKVVG QLEGSLSFEG PKPLSEILKR KREGASGNGS  600
ISSDGEDSGR RERVHQIGSS RIAVMDTPTV PGFDSKKVAG FNADVVDTVE ENDNNDEDGP  660
VTTDHSELVH DDPTSAAKGD ALETDDGLVV DTMGDQELEA YVQRDGESDY EMVEGGDFKP  720
EGENQEPEEE YLDDDEDGDD FSRRIGAMFS