PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90296.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 851aa MW: 98787.8 Da PI: 8.3223

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90296.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.4e-07	205	224	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+ +tG C++G+rC++ H RWR90296.1 205 CPFHIKTGACRFGSRCSRVH 224 ******************99 PP
2	zf-CCCH	27.3	6e-09	334	361	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ RWR90296.1 334 WKVAICGEYMKSRlkTCSRGTACNFIHC 361 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence
MADPIEEEGA SRCQEENPSK AETLDGPCRK EKRKAAKKQK RKQIRKEIAQ RELEEEEARM 60 NDPEEQLRIR MMEQEEAERC EKARKEFEER ERLWMEAAAA RKAEEEAQRK LLEESQRKQV 120 EQEKELEEED DWEYVEEGPA EIIWQGNEII VKKKRVKVSK KSADQLTEKE DTERPTSNPL 180 PPQSAAFAAY KNTSLVSAQQ DKAHCPFHIK TGACRFGSRC SRVHFYPDRS CTLLIKNMYN 240 GPGLAWEQDE GLEYTDEEVE RCYEEFYEDA HTEFLKFGEI VNFKVCRNGS FHLRGNVYVH 300 YKSLESAVLA YNSINGRYFA GKQITCEFVG VTRWKVAICG EYMKSRLKTC SRGTACNFIH 360 CFRNPGGDYE WADWDNPPPK YWVKKMAALF GPSDELANND MELENRERRN SSRKRTADGN 420 RYHRRRSRSR EDCQAVSDGD YPGEKRGRSH SKSSRRRSSR RQATGSPNEL KQSSERYGTH 480 DHDSGDDYYD ESRVRCSSYS REQPSTRKKE QDLACDRDSG RYRAGNGSRN QTRTHSSSRR 540 QEVDSPIENE KAAEKSISNI SDKCEEKSRS CAHDSEGYYP DSNRVQHGSH VSRRARTSSQ 600 KKYADSSYYD RKLEENYDSE DNEQYDGNHR SRDYSSNIGH DENGHRDKSR SSKGKRNNNL 660 KMSYHDECGK SKQMYDFDDQ DRYDGRCGSG GCDSSGDYEE NRSPSSNQSR RERASSLEKE 720 TDSPFKKRKV EENHRGRMKD RSPHSLNQYK RRYESRKLDL SDNKYFGGNK ESGSSSERSC 780 DGSVHDATTR AHSWSSSEDS DDLRQSRHHG KDRRDARKRN TNVKGKDRDS DAEGLRSKKV 840 YRKKSSSRSL G

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence

MADPIEEEGA SRCQEENPSK AETLDGPCRK EKRKAAKKQK RKQIRKEIAQ RELEEEEARM  60
NDPEEQLRIR MMEQEEAERC EKARKEFEER ERLWMEAAAA RKAEEEAQRK LLEESQRKQV  120
EQEKELEEED DWEYVEEGPA EIIWQGNEII VKKKRVKVSK KSADQLTEKE DTERPTSNPL  180
PPQSAAFAAY KNTSLVSAQQ DKAHCPFHIK TGACRFGSRC SRVHFYPDRS CTLLIKNMYN  240
GPGLAWEQDE GLEYTDEEVE RCYEEFYEDA HTEFLKFGEI VNFKVCRNGS FHLRGNVYVH  300
YKSLESAVLA YNSINGRYFA GKQITCEFVG VTRWKVAICG EYMKSRLKTC SRGTACNFIH  360
CFRNPGGDYE WADWDNPPPK YWVKKMAALF GPSDELANND MELENRERRN SSRKRTADGN  420
RYHRRRSRSR EDCQAVSDGD YPGEKRGRSH SKSSRRRSSR RQATGSPNEL KQSSERYGTH  480
DHDSGDDYYD ESRVRCSSYS REQPSTRKKE QDLACDRDSG RYRAGNGSRN QTRTHSSSRR  540
QEVDSPIENE KAAEKSISNI SDKCEEKSRS CAHDSEGYYP DSNRVQHGSH VSRRARTSSQ  600
KKYADSSYYD RKLEENYDSE DNEQYDGNHR SRDYSSNIGH DENGHRDKSR SSKGKRNNNL  660
KMSYHDECGK SKQMYDFDDQ DRYDGRCGSG GCDSSGDYEE NRSPSSNQSR RERASSLEKE  720
TDSPFKKRKV EENHRGRMKD RSPHSLNQYK RRYESRKLDL SDNKYFGGNK ESGSSSERSC  780
DGSVHDATTR AHSWSSSEDS DDLRQSRHHG KDRRDARKRN TNVKGKDRDS DAEGLRSKKV  840
YRKKSSSRSL G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-133	C3H family protein