PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR90075.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 387aa MW: 43617.8 Da PI: 5.0893

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR90075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.8	2.7e-18	73	123	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr+++ +grW+AeI+dp + r r++lg+f+taeeAa+a ++ + +++g RWR90075.1 73 SSYRGVRRRP-SGRWAAEIHDPEK---RVRVWLGTFDTAEEAARAFDKKAIEFRG 123 67******.7*****743...6**********************998 PP
2	AP2	60	5.4e-19	237	287	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr+++ +grW+AeI+dp++ r+r++lg+f+taeeAa+a ++ +++++g RWR90075.1 237 SYYRGVRQRP-SGRWAAEIHDPKK---RARVWLGTFDTAEEAARAFDKKALEFRG 287 569*****.7*****965...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MRLWRAALFV HDLKMPLHGL GDAPPSSGSS ILLNVNEDPC STCGHGVENC LGCNLFSPPY 60 ENREEEEEEE ERSSYRGVRR RPSGRWAAEI HDPEKRVRVW LGTFDTAEEA ARAFDKKAIE 120 FRGAKPRLTF LVLILTREEE NSIILSTYKH ILSNGIMDGT IVHDLKMPFQ GLGRDAPPTS 180 ASLILLNVSE DSCSICGLGI DYCLGCNLFS PPYENKEEEE EEEEAAAEEE QQEKKRSYYR 240 GVRQRPSGRW AAEIHDPKKR ARVWLGTFDT AEEAARAFDK KALEFRGTRA KLNFPSTEYG 300 PKPPDNTLLE GQHKQQLQHI WNWEAPTEME YGARNMSEAL GGEEFQNWVK IDPNQYAIAA 360 ASSNASSATT SDKQGILERM RKQGGPL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MRLWRAALFV HDLKMPLHGL GDAPPSSGSS ILLNVNEDPC STCGHGVENC LGCNLFSPPY  60
ENREEEEEEE ERSSYRGVRR RPSGRWAAEI HDPEKRVRVW LGTFDTAEEA ARAFDKKAIE  120
FRGAKPRLTF LVLILTREEE NSIILSTYKH ILSNGIMDGT IVHDLKMPFQ GLGRDAPPTS  180
ASLILLNVSE DSCSICGLGI DYCLGCNLFS PPYENKEEEE EEEEAAAEEE QQEKKRSYYR  240
GVRQRPSGRW AAEIHDPKKR ARVWLGTFDT AEEAARAFDK KALEFRGTRA KLNFPSTEYG  300
PKPPDNTLLE GQHKQQLQHI WNWEAPTEME YGARNMSEAL GGEEFQNWVK IDPNQYAIAA  360
ASSNASSATT SDKQGILERM RKQGGPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13330.1	2e-27	ERF family protein