PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89912.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family MYB
Protein Properties Length: 323aa    MW: 36293 Da    PI: 6.5099
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv++++++G g+W++ ++  g++R++k+c++rw +yl
       RWR89912.1 14 KGPWTPEEDTKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.71.1e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++teE++ +++++  lG++ W++Ia++++ gRt++++k++w+++
       RWR89912.1  67 RGKFSTEEEQTILNLHSILGNK-WSAIASHLP-GRTDNEIKNFWNTH 111
                      89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGRSPCCDEN GMKKGPWTPE EDTKLVQYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF STEEEQTILN LHSILGNKWS AIASHLPGRT DNEIKNFWNT HIKKKLIHMG  120
IDPNTHRPRT DFFTTLPELM VIANLKEVMM DNQPWAEHAV RLQEAVQLAK YQYIQYLIQS  180
AVSVASNPDS SSNSTADMDA INVMSSLPLL RENLGLNPSQ IENATQYSLG VDGGRPLNDK  240
LPYTTPPDLE FQALMRNEIN QDSDLASLSQ GEFTPRSPLP PSPPFTIGER SMKNPADACC  300
TSSYDGSSPS FWAELLLDDP FYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.15e-98MYB family protein