PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89873.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 339aa MW: 38412.3 Da PI: 5.929

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.3	7.2e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++ ++ +s RWR89873.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSERVSHFS 58 79*******************************************99987 PP
2	K-box	23	3.4e-09	110	181	9	80
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 + +++ e+l+q++ + ++++++ ++ +R + + L+ s+ eL++ e+ L ++l+++ ++K+ ll ++++ RWR89873.1 110 AVNSNVEELKQDIGRFQQQLQMAEERLRIFEPDPLKITSIDELESCEKFLVEALTRVSQRKKYLLSNHLSSY 181 667899************************************************************998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SERVSHFSGK 60 RRIEDVLTRY INLPDHDRGG AVQNREYLIR TLKKLKCESD VATQLANPGA VNSNVEELKQ 120 DIGRFQQQLQ MAEERLRIFE PDPLKITSID ELESCEKFLV EALTRVSQRK KYLLSNHLSS 180 YDTSSIQMYL ESQEAIPTSF ENEVVNWMPN NNTHNQGHVY VGSDSLVSLR DHPTSLYDPL 240 SQSTRLQVNP RTGECHVSSN PPDDGMIPAW HQAYTSTELL SSLIPSHSFP LIQHVMGAPD 300 LPPMLPQEQV ETPTSCSHVP TTDEGAATYE SHVTELNVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-104	MIKC_MADS family protein