PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR89817.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 764aa    MW: 82529.4 Da    PI: 6.2031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR89817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.59.3e-964027631374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++Ll++Ae v++g+   aq++Larl+++ sp g+p++R+a+yf+eAL+  l +  s++ +++p s+ +    + +++a+k+fsevsP+l+f ++t N
  RWR89817.1 402 LVDQLLKAAELVEAGNSIHAQEILARLNHQLSPVGKPLHRAAFYFKEALQLLLENDNSTTPHSIPISPLD---LVFKITAYKAFSEVSPFLQFVNFTSN 497
                 6899***************************************************99*********9998...************************** PP

        GRAS 100 qaIleavegeervHiiDfdisq....GlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 q +lea++g + +Hi+Dfdi+     G+QW++++q+La Rp+g+psl+iTg++s +s++   l   +e+L++fA+el +p+efn++  ++l+  ++ +L
  RWR89817.1 498 QVLLEALHGFDPIHIVDFDIGLglglGGQWASFMQELALRPGGAPSLKITGFVSLSSQDPLGLCLAKENLSHFANELAIPLEFNLFNIDSLDLSSIAAL 596
                 *******************986222268**********************************************************9999988888887 PP

        GRAS 195 ...rvkpgEalaVnlvlqlhrlldesvsleserdevLklv.kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvEre 288
                    +++++Ea+aVnl +          s    ++++L+l+ k+lsPk+v  v+  +d+++ +F + f++al+ ys l+dsl+a+  ++s ++ +k+Er+
  RWR89817.1 597 pvlNWSENEAVAVNLPVGP--------S----TPSLLRLItKQLSPKIVLTVDCGCDRSELPFSHYFFNALQSYSLLLDSLDAS--NASfDAVQKIERF 681
                 3335666********9932........2....34599987689**************************************999..344599******* PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +l+++i++ v  +++       +l  Wr+ l++aGF+pvpls++ ++qa++ll++ + +g++ve++++sl+lgW++ +LvsvSaWr
  RWR89817.1 682 ILQPKIESTVLGRHRT----GGKLPPWRSLLTSAGFSPVPLSNFSETQADYLLKRLQLRGFHVEKRQASLCLGWQRGELVSVSAWR 763
                 ***********99988....899**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    
MKGVSCHLPG KGKGALLQRP AEVVVVSAPP LPNSKSQVSF GSTEPTSVLD TRSPSPPTSS  60
TSTLSSSFGD TAGMVAASDN PPYKWPPSQH TSPALEDEGG GGSRKEEWAN HLLQQPMPAS  120
SLEIGAGGCE KRGLGMEEWV SVLPESASSP SNDQSFFQWF GSDMDDPSLK HLLQSGGGAP  180
EFESSDGAGL GIPDMGFGFE NVSFNSLANA SASANANSFG APATCAAAAT DFACLNGNMM  240
NTSKQQLLSI QNPTNPLPSF GGGGGGFNKD CHPPNPFFSL PPSLLDPLDE KPPVFNLQHH  300
VHPQNPAFLL PTPPYAHAQQ QQHHLLPPQP KRRHPTIPDM GFLIPRAPFS DSGQELFLRR  360
QQQQSFSNIH LLPQHLQHKP PLKLMGASPE DSTTLQQQQQ ALVDQLLKAA ELVEAGNSIH  420
AQEILARLNH QLSPVGKPLH RAAFYFKEAL QLLLENDNST TPHSIPISPL DLVFKITAYK  480
AFSEVSPFLQ FVNFTSNQVL LEALHGFDPI HIVDFDIGLG LGLGGQWASF MQELALRPGG  540
APSLKITGFV SLSSQDPLGL CLAKENLSHF ANELAIPLEF NLFNIDSLDL SSIAALPVLN  600
WSENEAVAVN LPVGPSTPSL LRLITKQLSP KIVLTVDCGC DRSELPFSHY FFNALQSYSL  660
LLDSLDASNA SFDAVQKIER FILQPKIEST VLGRHRTGGK LPPWRSLLTS AGFSPVPLSN  720
FSETQADYLL KRLQLRGFHV EKRQASLCLG WQRGELVSVS AWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-96GRAS family protein