PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR89741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LSD | ||||||||
Protein Properties | Length: 133aa MW: 14157.8 Da PI: 8.3475 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 36.6 | 7.7e-12 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL Y++GA+sV+C++C+ V RWR89741.1 27 CSGCRNLLLYTPGATSVCCTVCNVV 51 ***********************98 PP | |||||||
2 | zf-LSD1 | 34.3 | 4e-11 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+t L+Y r A sV+C++C+tV RWR89741.1 66 CGGCHTQLMYIRSANSVQCPCCHTV 90 ************************9 PP | |||||||
3 | zf-LSD1 | 27.3 | 6e-09 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+Y rG +sV+Ca+C++V RWR89741.1 104 CGNCCMLLMYRRGGRSVKCAVCNFV 128 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence |
MPVPIVPYST ALVACTPRIG AQRQLVCSGC RNLLLYTPGA TSVCCTVCNV VTSVPPSGAQ 60 MAQLICGGCH TQLMYIRSAN SVQCPCCHTV NLALEENQVA HVNCGNCCML LMYRRGGRSV 120 KCAVCNFVTS VRV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-48 | LSD family protein |