PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR89585.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LSD | ||||||||
Protein Properties | Length: 125aa MW: 13427.4 Da PI: 5.5743 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 34.7 | 2.9e-11 | 36 | 60 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr l sYPrGA++VRC++C+t+ RWR89585.1 36 CGTCRELNSYPRGARRVRCSCCQTI 60 ***********************97 PP | |||||||
2 | zf-LSD1 | 46.5 | 6e-15 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GAp+V+C++C++V RWR89585.1 74 CGGCTVLLMYPYGAPLVKCSVCHFV 98 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence |
MDAVMESSDA ESESAPPGFQ CLCPPPPLPE MGQVVCGTCR ELNSYPRGAR RVRCSCCQTI 60 NVVLEAHQTG NVKCGGCTVL LMYPYGAPLV KCSVCHFVTE IGVQNERPPL SVQQGQPPPI 120 DNPTH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 1e-34 | LSD family protein |