PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR89306.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18597.5 Da PI: 8.2156 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.2 | 2.8e-38 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf +e+ + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v+ +l+lqqq+ +l+aela ++ RWR89306.1 10 PCGACKFLRRKCVSGCVFAPYFDSEEgAGQFAAVHKVFGASNVSKLLLQIPLHKRLDAVITICYEAQARLRDPVYGCVANLLALQQQVVSLQAELACMQ 108 7*********************998879********************************************************************998 PP DUF260 99 ee 100 ++ RWR89306.1 109 AH 110 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence |
MSRNGCSSGP CGACKFLRRK CVSGCVFAPY FDSEEGAGQF AAVHKVFGAS NVSKLLLQIP 60 LHKRLDAVIT ICYEAQARLR DPVYGCVANL LALQQQVVSL QAELACMQAH LATSELPSLP 120 PLPLTVSDLP SASALPTSYD LSTLLDPQQM QSSWSVQQHL IGRHRSSPPF NK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 1e-48 | LBD family protein |