PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89169.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 263aa MW: 30188.4 Da PI: 9.2554

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.4	2.9e-31	48	97	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ RWR89169.1 48 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 97 79***********************************************8 PP
2	K-box	110.1	2.3e-36	117	212	5	100
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +g s++e +++ +qqe++kL+++i Lq+ +Rhl+Ge L+s+++keL+qLe++Lek++++iR+kKne+l+++ie++qk+e +lq++n +Lr+k++e RWR89169.1 117 NGGSTTEVNSQFYQQESSKLRQQIGILQNANRHLMGEALSSMTVKELKQLETRLEKGISRIRTKKNEMLFAEIEYMQKREVDLQNDNLYLRAKIAE 212 556688999************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MNLCSEEGNL ISFPPQASKS VGEDVLPLLR IQGNSPTEKM GRGKIEIKRI ENTTNRQVTF 60 CKRRNGLLKK AYELSVLCDA EVALIVFSTR GRLYEYANNS VKRTIERYKK ASADTLNGGS 120 TTEVNSQFYQ QESSKLRQQI GILQNANRHL MGEALSSMTV KELKQLETRL EKGISRIRTK 180 KNEMLFAEIE YMQKREVDLQ NDNLYLRAKI AENERAQQHM NNMLPVPEYD VMPAFDSRNF 240 LQVNLLEPNN HYSHQEQTAL QLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-112	MIKC_MADS family protein