PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89129.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 579aa MW: 61368.2 Da PI: 7.4391

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	177	201	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ RWR89129.1 177 GEKDCAYYMMTRTCKFGDSCKFDHP 201 7889********************9 PP
2	zf-CCCH	34.9	2.6e-11	228	254	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t Ck+G+rCkF+H++ RWR89129.1 228 PGEPDCPYYLKTQRCKFGPRCKFNHPK 254 5789*********************96 PP
3	zf-CCCH	40.4	4.9e-13	285	309	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G +CkF+H++ RWR89129.1 285 EPICSYYMKTGKCKFGVNCKFHHPK 309 799********************96 PP
4	zf-CCCH	38.3	2.2e-12	364	389	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG++C+++H+ RWR89129.1 364 PGEVDCPFYLKTGSCKYGATCRYNHP 389 57899********************9 PP
5	zf-CCCH	41.8	1.8e-13	453	474	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+++tG+CkyG+rCkF+H+ RWR89129.1 453 ECDFYMKTGECKYGERCKFHHP 474 7********************9 PP
6	zf-CCCH	41.3	2.5e-13	505	530	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +t +C+f+++tGtCk+G++C+F H+p RWR89129.1 505 GTIICPFYMKTGTCKFGPTCRFDHPP 530 6889********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MANQVYGFAS SYGGAGISNV YSSRLGGGAT AADPYHSDPS LMGSSRYLTS DPLSGADSSK 60 FSVVERGYDG LRFSGDMSGF GVSGGFTASR IPGGVGAAAA PTYSQASWTG VEALQAAAME 120 PAVPGVKRSA EALYHQTLMG THNAIGQSEA LFSSNSLAKH PRYESASSLP VYPQRPGEKD 180 CAYYMMTRTC KFGDSCKFDH PVWVPEGGIP DWKEVPFVPG VESLPERPGE PDCPYYLKTQ 240 RCKFGPRCKF NHPKDKIQNP SAGADVVEGA SETVDASLLP ERPSEPICSY YMKTGKCKFG 300 VNCKFHHPKD IQISAVGQDA VSGEQNEAAN KDGETATGDS KAAKTFVPFT PALLHNSKGL 360 PIRPGEVDCP FYLKTGSCKY GATCRYNHPD RIAIKPPVAG VFGHSVMPSP AANISIGGIN 420 HAASMIPNID PRLATSTLGL GPTIYPQRPG QMECDFYMKT GECKYGERCK FHHPVDRSAP 480 TPSMMKQALQ QNVKLTLAGL PRREGTIICP FYMKTGTCKF GPTCRFDHPP PGEVIAKAAV 540 QGSSGEEKDA EGAAAAAEAT AAGDAAVTLQ QVVAAAAEQ

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MANQVYGFAS SYGGAGISNV YSSRLGGGAT AADPYHSDPS LMGSSRYLTS DPLSGADSSK  60
FSVVERGYDG LRFSGDMSGF GVSGGFTASR IPGGVGAAAA PTYSQASWTG VEALQAAAME  120
PAVPGVKRSA EALYHQTLMG THNAIGQSEA LFSSNSLAKH PRYESASSLP VYPQRPGEKD  180
CAYYMMTRTC KFGDSCKFDH PVWVPEGGIP DWKEVPFVPG VESLPERPGE PDCPYYLKTQ  240
RCKFGPRCKF NHPKDKIQNP SAGADVVEGA SETVDASLLP ERPSEPICSY YMKTGKCKFG  300
VNCKFHHPKD IQISAVGQDA VSGEQNEAAN KDGETATGDS KAAKTFVPFT PALLHNSKGL  360
PIRPGEVDCP FYLKTGSCKY GATCRYNHPD RIAIKPPVAG VFGHSVMPSP AANISIGGIN  420
HAASMIPNID PRLATSTLGL GPTIYPQRPG QMECDFYMKT GECKYGERCK FHHPVDRSAP  480
TPSMMKQALQ QNVKLTLAGL PRREGTIICP FYMKTGTCKF GPTCRFDHPP PGEVIAKAAV  540
QGSSGEEKDA EGAAAAAEAT AAGDAAVTLQ QVVAAAAEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein