PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89060.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 1033aa MW: 116557 Da PI: 6.5095

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.3	5e-39	135	210	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv++C+++l+++++yhrrhkvCe+h+k+++vl+ g+ qrfCqqCsrfh l+efDeekrsCrr+La+hn+rrrk++ RWR89060.1 135 CQVDDCNVNLNDVRDYHRRHKVCETHAKSTSVLLGGVLQRFCQQCSRFHLLQEFDEEKRSCRRQLAGHNRRRRKNT 210 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence
MEMPNGSDEM RQMRAPVEHN FMVKGKQVVL EKQNTEWDLN EWKWDGNLFI AERRSFSNAE 60 EVLPIDAVGK DGKAVDKRRK LSVLKDDEFG EGDASLTLKL GGEVKRIEER EDGSCEDKNG 120 KRVKSQSSLL KHPSCQVDDC NVNLNDVRDY HRRHKVCETH AKSTSVLLGG VLQRFCQQCS 180 RFHLLQEFDE EKRSCRRQLA GHNRRRRKNT LDTIVSDHPL KDDQASRYIL FYLLKILTNL 240 QSKNSDHSKD QDLLLQLLRT LSGPKVITEP EILSALAHLL SQTSTEVCAE KDISILSESL 300 RGGATVPEIS AIVRSTAAAS SSISSQDHIM DVTNCMPMNV ARPCQLQVPL PARNPLNEII 360 GSVPLQDTNA VCPIGDGPPR MQSDACYLMP SKEAKVGEQN RTKINDFDLN SSYNESQDCR 420 EGSQKLSQND WKIPQIGHYN FPSWPNQDIP QTITANSSGN SESTSDKSRS SSGEDLRCCT 480 DQIIFKLFGK DPSDLPHVLR AQIQSWLLHS PTNIESHIKP GCLVLTIYTR LSKHVWEELC 540 NNLTSSLKRL LEASDDNFWR TGWICAKVGL QLAFIYDGRV LLDMPLPSSQ DAPSIISVTP 600 VAVDLSEESL FTVKGWNLGR TTTKLLCAFH GKQIVQEIGF DTIEMNGFGS SSDSSESLDG 660 YNVETQTLCF TCSFSKTVGR GFIEVEDHGL GSGFFPFIVA EQEICSELRT LEIIFTSNEM 720 SSRNQVIQFL MEFGWLLERS RHLISRPELT ALRSTEFSSV RFKWLLEFSI DRDWCAVVKK 780 ILDIVFDRRV GGPDLSVDQL LNEVSPLHRA VRRNCRPMVD FLLKYSPEEK RALESSQEIK 840 FSKQTFKSNK KGPAGITPLH IAASIEGADD VLNLLTDDPE QEWVQTWEKD HDASGFTPEN 900 YARQRGHDKY IDLVQRKKTN KASPKHLILD LSSSLPATRR VEESLSMSQG TFVKQKHTAL 960 NVDSRSMEQF KCQACEQMSV YRSGHRFLNY RPAILSMVAI AAVCVCVGLL LKSPPEVLFV 1020 VAFRWELIDY GYM

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence

MEMPNGSDEM RQMRAPVEHN FMVKGKQVVL EKQNTEWDLN EWKWDGNLFI AERRSFSNAE  60
EVLPIDAVGK DGKAVDKRRK LSVLKDDEFG EGDASLTLKL GGEVKRIEER EDGSCEDKNG  120
KRVKSQSSLL KHPSCQVDDC NVNLNDVRDY HRRHKVCETH AKSTSVLLGG VLQRFCQQCS  180
RFHLLQEFDE EKRSCRRQLA GHNRRRRKNT LDTIVSDHPL KDDQASRYIL FYLLKILTNL  240
QSKNSDHSKD QDLLLQLLRT LSGPKVITEP EILSALAHLL SQTSTEVCAE KDISILSESL  300
RGGATVPEIS AIVRSTAAAS SSISSQDHIM DVTNCMPMNV ARPCQLQVPL PARNPLNEII  360
GSVPLQDTNA VCPIGDGPPR MQSDACYLMP SKEAKVGEQN RTKINDFDLN SSYNESQDCR  420
EGSQKLSQND WKIPQIGHYN FPSWPNQDIP QTITANSSGN SESTSDKSRS SSGEDLRCCT  480
DQIIFKLFGK DPSDLPHVLR AQIQSWLLHS PTNIESHIKP GCLVLTIYTR LSKHVWEELC  540
NNLTSSLKRL LEASDDNFWR TGWICAKVGL QLAFIYDGRV LLDMPLPSSQ DAPSIISVTP  600
VAVDLSEESL FTVKGWNLGR TTTKLLCAFH GKQIVQEIGF DTIEMNGFGS SSDSSESLDG  660
YNVETQTLCF TCSFSKTVGR GFIEVEDHGL GSGFFPFIVA EQEICSELRT LEIIFTSNEM  720
SSRNQVIQFL MEFGWLLERS RHLISRPELT ALRSTEFSSV RFKWLLEFSI DRDWCAVVKK  780
ILDIVFDRRV GGPDLSVDQL LNEVSPLHRA VRRNCRPMVD FLLKYSPEEK RALESSQEIK  840
FSKQTFKSNK KGPAGITPLH IAASIEGADD VLNLLTDDPE QEWVQTWEKD HDASGFTPEN  900
YARQRGHDKY IDLVQRKKTN KASPKHLILD LSSSLPATRR VEESLSMSQG TFVKQKHTAL  960
NVDSRSMEQF KCQACEQMSV YRSGHRFLNY RPAILSMVAI AAVCVCVGLL LKSPPEVLFV  1020
VAFRWELIDY GYM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-155	SBP family protein