PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR89022.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

FAR1

Protein Properties

Length: 1181aa MW: 133711 Da PI: 7.7068

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR89022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.9	6.7e-08	104	189	8	88
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++ GF +++++s + ++ + t+ C ++g +++ k+ +ek+ + ++++++gC +l+ k+ ++ w+++ + HnH+ RWR89022.1 104 RRNGFVIVIKTSAAAGHGNKKPRVTLGCERSGCYRDTGKNrevnAEKKMKLTSSKKCGCPFSLMGKNLGtNDDWMLHVVCGVHNHP 189 789**********99999********9999999888878888889999**9999988777*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1181 aa Download sequence
MDFELRAAKE KLEREQRQRK ERATRKLERE KKAKAESSRQ REAIEAAQRS RRLDAARAEL 60 LDDASTQCSN VGSECERDYS SEFITQEIFK SREALIKWAR DVGRRNGFVI VIKTSAAAGH 120 GNKKPRVTLG CERSGCYRDT GKNREVNAEK KMKLTSSKKC GCPFSLMGKN LGTNDDWMLH 180 VVCGVHNHPA GDVLEGHSYA GRLSEEETSL LVDMSKNMVQ PKEILVTLKE RCDLNVSTMK 240 TIYNARHRFK VAEKAGRTQM QQLFAQLVDH KYIECHRKCD DTETVTDLFW THPTNLDLLR 300 AFPHVLIMDC TCKTNRYRMP LLEIVGVTST DLTFSVCFAY LQYDREDNYA WALGILRSVI 360 GEGVLPSVIV TDREMALMKA ISMVFPGATH FLCRWHINRN VFAKCKKSFE TKEKWDRFIM 420 SWDMLVSSST EEQYILQLAM LNKEFNTYPE ALEYVRCSWL DPYRDKFVAA WTDRSMHFGN 480 TTTNRAGSSH AQLKRQLGSS QGTFESYWMK IHNFLELQHT NIKASFEKSK TIVQHIFKPS 540 EFKELRGNIS ISALEKILAE TKRANSVGID QDACGCVIRH THGLPCAHEI AKYIREGRPI 600 PLNCIHPHWC KLDMLATATP KSSSMELDCV PELELIAQRF KEYDSSRKLQ LLNKLRELAV 660 PVIEPEFKSR TRGPHLKANQ QMEESLLVGK GVVFYRVLEA VPYQGYGDKI KLPPSCFTEL 720 SDQGALDKGP MYFRLSKIYQ DPEASEQQNQ KNTHSGVLEF TAPEGSVELP PHVWSNLFSA 780 TSQNTPLIEV RYVRLPKGTY AKLQPDGMGF SDIPNHKAVL ETSLRQHATL SEGDMVSVSH 840 GDLNYKLQVL ELKPSSSVSV LETDIEVDIV RSDSASETTQ HVLVPLLFGK AEPGFVEEGK 900 YSYYKFSVDN IISEKIASGD MNVVVKIDVE TNGGDTDLYV SRHPVIFPSQ HQHEWSSHDV 960 GSKILILSPK DQNLIAGIYS IGVFGFKGLT KYHILVYVED CSNRRVGEKA LSSSSSSAAD 1020 TVECQNCKHY IPTNTIALHE AFCSRHNVVC QYEGCGVVLR KEEMGNHVHC IKCGRAFQQG 1080 EIEKHMKVFH EPLHCLCGAV LEKEEMVQHQ SFVCPLRLIP CRFCGDMVQA GSSASDFRDR 1140 LRGLSEHESV CGSRTAPCDS CGRSVMLKEM DIHRVAVHQK D

Sequence ? help Back to Top

Protein Sequence Length: 1181 aa Download sequence

MDFELRAAKE KLEREQRQRK ERATRKLERE KKAKAESSRQ REAIEAAQRS RRLDAARAEL  60
LDDASTQCSN VGSECERDYS SEFITQEIFK SREALIKWAR DVGRRNGFVI VIKTSAAAGH  120
GNKKPRVTLG CERSGCYRDT GKNREVNAEK KMKLTSSKKC GCPFSLMGKN LGTNDDWMLH  180
VVCGVHNHPA GDVLEGHSYA GRLSEEETSL LVDMSKNMVQ PKEILVTLKE RCDLNVSTMK  240
TIYNARHRFK VAEKAGRTQM QQLFAQLVDH KYIECHRKCD DTETVTDLFW THPTNLDLLR  300
AFPHVLIMDC TCKTNRYRMP LLEIVGVTST DLTFSVCFAY LQYDREDNYA WALGILRSVI  360
GEGVLPSVIV TDREMALMKA ISMVFPGATH FLCRWHINRN VFAKCKKSFE TKEKWDRFIM  420
SWDMLVSSST EEQYILQLAM LNKEFNTYPE ALEYVRCSWL DPYRDKFVAA WTDRSMHFGN  480
TTTNRAGSSH AQLKRQLGSS QGTFESYWMK IHNFLELQHT NIKASFEKSK TIVQHIFKPS  540
EFKELRGNIS ISALEKILAE TKRANSVGID QDACGCVIRH THGLPCAHEI AKYIREGRPI  600
PLNCIHPHWC KLDMLATATP KSSSMELDCV PELELIAQRF KEYDSSRKLQ LLNKLRELAV  660
PVIEPEFKSR TRGPHLKANQ QMEESLLVGK GVVFYRVLEA VPYQGYGDKI KLPPSCFTEL  720
SDQGALDKGP MYFRLSKIYQ DPEASEQQNQ KNTHSGVLEF TAPEGSVELP PHVWSNLFSA  780
TSQNTPLIEV RYVRLPKGTY AKLQPDGMGF SDIPNHKAVL ETSLRQHATL SEGDMVSVSH  840
GDLNYKLQVL ELKPSSSVSV LETDIEVDIV RSDSASETTQ HVLVPLLFGK AEPGFVEEGK  900
YSYYKFSVDN IISEKIASGD MNVVVKIDVE TNGGDTDLYV SRHPVIFPSQ HQHEWSSHDV  960
GSKILILSPK DQNLIAGIYS IGVFGFKGLT KYHILVYVED CSNRRVGEKA LSSSSSSAAD  1020
TVECQNCKHY IPTNTIALHE AFCSRHNVVC QYEGCGVVLR KEEMGNHVHC IKCGRAFQQG  1080
EIEKHMKVFH EPLHCLCGAV LEKEEMVQHQ SFVCPLRLIP CRFCGDMVQA GSSASDFRDR  1140
LRGLSEHESV CGSRTAPCDS CGRSVMLKEM DIHRVAVHQK D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-14	FAR1 family protein