PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88894.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 282aa MW: 32427.1 Da PI: 6.0148

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.4e-20	27	81	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le+ Fe++ ++ +++ eLA+ lgL+ rqV +WFqNrRa++k RWR88894.1 27 KNKRRFSDEQIRSLESKFEEETKLEPQKKVELARDLGLQPRQVAIWFQNRRARWK 81 56789*************************************************9 PP
2	HD-ZIP_I/II	124.3	5.8e-40	28	119	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eq+++LE++Feee+kLep++Kvelar+Lglqprqva+WFqnrRAR+k+kqlE++y+aL+++ydal+++ e+L++e++ L e+l++ RWR88894.1 28 NKRRFSDEQIRSLESKFEEETKLEPQKKVELARDLGLQPRQVAIWFQNRRARWKSKQLEREYSALRANYDALASSFESLKEEKQCLLEQLRK 119 79*************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MKMDRVVEYG GGGGEESFHG VRRKKMKNKR RFSDEQIRSL ESKFEEETKL EPQKKVELAR 60 DLGLQPRQVA IWFQNRRARW KSKQLEREYS ALRANYDALA SSFESLKEEK QCLLEQLRKL 120 GDLLEKHPKE NSCCGSGPNS KSGDHHSDKR EIKSEEYEQR DIVDKGSDVT VIVYTDGGNG 180 KNNDGFRPKE AGSQSMEETG DGSLTLPDWS GFDPECYSDQ SCSSLQWWDL WQIPNKSGAM 240 KIEDQNCEKC EQWNTQVYCG YIEFQSRGMH AKTTSVILHA FD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	84	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	3e-43	HD-ZIP family protein